Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00580 ATGCCAGTTCCACTTGCCCCCTACCCACCTCCATATACTCATCCAGAAGATGGTGCACAGAGTCAACTTGTGTGTTCCGGGTGTAGAAGCCTTCTGCTCTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAACAGTGCCACCTCCCGGCACAGAAATGGCCCAGTTGGTTTGTGGAGGCTGTCACACTCTCCTCCAGTACATCCGTGGAGCAACAAGTGTGCAATGCTCTTGTTGTCACACAATCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGTAAGATGCTACTCATGTACCAGTATGGAGCAAGATCCGTGAAATGTGCGGTTTGCAATTTTGCAACATCAATTGGGGCCTCAACAAGCATCACTGAACAGAAATTCAGCAACTAA 429 0.4895 MPVPLAPYPPPYTHPEDGAQSQLVCSGCRSLLLYPVGATSVCCAVCNAVTTVPPPGTEMAQLVCGGCHTLLQYIRGATSVQCSCCHTINLALEANQVAHVNCGNCKMLLMYQYGARSVKCAVCNFATSIGASTSITEQKFSN. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00580 142 NCBIfam zinc finger domain, LSD1 subclass 99 125 IPR005735 -
Seca10g00580 142 NCBIfam zinc finger domain, LSD1 subclass 61 90 IPR005735 -
Seca10g00580 142 NCBIfam zinc finger domain, LSD1 subclass 22 52 IPR005735 -
Seca10g00580 142 PANTHER PROTEIN LSD1 20 131 IPR040319 -
Seca10g00580 142 Pfam LSD1 zinc finger 102 124 IPR005735 -
Seca10g00580 142 Pfam LSD1 zinc finger 25 49 IPR005735 -
Seca10g00580 142 Pfam LSD1 zinc finger 64 88 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00580 Seca-Chr10 5250650 5253079 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Seca10g00580 zf-LSD1 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00580 - - jre:108994098 249.98