Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00578 ATGGCATCACTGCCTCCAGGTTTTCGTTTCCATCCAACTGATGAAGAATTGATAGGATATTACCTAAAAAGAAAAGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATTCCCGTGATCGATTTCTACAAATTTGATCCCTGGGAGTTGCCGGAGAAATCTTTCCTACCAAAAAGAGATTTGGAGTGGTTTTTCTTCTGTCCACGAGATCGCAAGTACCCAAATGGATCACGGACAAATAGAGCCACCAAAGCTGGATACTGGAAAGCCACTGGAAAAGACAGGAAGATTGTGTGTCACTCTAGTCCATTCACTTCCACTGAGACAGTGACAGGGTACCGTAAGACCCTTGTTTTCTATTGTGGAAGGGCACCCTTAGGAGATCGAACAGATTGGGTCATGCATGAGTATCGCCTTTGTGATGATCCTGCCCAAGGCTCACAGGTAAAGTTTTTGGGTGCTTTTGCTTTGTGCCGTGTTGTTAAAAAGAATGAGAAGGCCAATGATTTCCAAGGACACAAGGGCAAAAGCAGAAGGGTTGGGAACAATTCCACTAATGGGATTGGGAATGACACAACAATGAGATTCTCTAATGAGCTCTCCATTATCTCTGGTGATATTTCCTCTCAGGTTAGTCAAATGTGCAGTGCCAGTGAGAGTCGTTATTCAAGTCCTATTGATTCTCCATGCAATGTGGCTCCATTGACTGGGTTTGAGCAAGCTTCCACAAACACCAATCCCTCTAGCTTCTGGCTCTCCCCTGATATGATTCTTGATTCTTCAAAGGACTACTCTCAAATACAAGATGTTGTTGGATATTTTCCACAGCATGACTTATCAAGTACAATGACACCATGGCAATCATTTGAACATACAGAAATTTCACCCAGTTCATCCTACTCAAATTTTAATGGAGAAATGGAATTTTCTGATGATTTCAGTAAAATTGGCTGCATGTCACCTTACTCAGGACAAGGAAACTTCATGGACTTTTATGTAAATGAGGCTGTGCCTTATGAAAGTTATGACCAAATTAATTCAATCAGAGATCCAAAACAATTCTGA 1062 0.4171 MASLPPGFRFHPTDEELIGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKIVCHSSPFTSTETVTGYRKTLVFYCGRAPLGDRTDWVMHEYRLCDDPAQGSQVKFLGAFALCRVVKKNEKANDFQGHKGKSRRVGNNSTNGIGNDTTMRFSNELSIISGDISSQVSQMCSASESRYSSPIDSPCNVAPLTGFEQASTNTNPSSFWLSPDMILDSSKDYSQIQDVVGYFPQHDLSSTMTPWQSFEHTEISPSSSYSNFNGEMEFSDDFSKIGCMSPYSGQGNFMDFYVNEAVPYESYDQINSIRDPKQF. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00578 353 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
Seca10g00578 353 MobiDBLite consensus disorder prediction 176 190 - -
Seca10g00578 353 Pfam No apical meristem (NAM) protein 5 138 IPR003441 GO:0003677|GO:0006355
Seca10g00578 353 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 239 - -
Seca10g00578 353 Gene3D NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Seca10g00578 353 MobiDBLite consensus disorder prediction 169 190 - -
Seca10g00578 353 FunFam Nac domain-containing protein 86 13 165 - -
Seca10g00578 353 SUPERFAMILY NAC domain 2 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00578 Seca-Chr10 5236335 5238824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00578 2 307 NAC Transcription Factor Family AT4G17980 55.484 9.50e-103 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca10g00578 NAM 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00578 - - adu:107487585 518.85