Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00568 ATGGTTTGCACTGCCAATGATTTACAGGGATGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGAAGGAGACAGCGGTTCTGCTGCTGAGATAAAAGCAAAGCTTGAGGCCATGGACTATAATGTTTCTACTTTCTACAATGAGAATGATGCCTTGTCAGCAATCTCAAGTAGTCCTGAAGGCTTCCATGTTGCTGTAGTAGAGGTGAATATAAGCAGTAGCCAAGGGGGTTTCAAATTTCTTGAGAATGCGAAGGACTTGCCAACCATTAGTAAGTACAGAACCAAGCCTAACTTTGCTGTTTTTTATGTAGTGACTTCAAAGAGTCAATGCCTGAACACAATGATGAAGTGTATTGCGCTTGGCGCAGTTGAGTTCCTCACTAAACCACTCTCTGAAGACAAGCTCAAAAATATTTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGCAAGTGCTCTGTCTGAATCACTAAAACCTGTCAAAGAATCTGTAGAGTCCATGTTGCAGCTCCAATCAGAGAACAAACAACCTGAAAGTACAATTTCAATAGATTTAGAGAATGTGTCCAGGTACAGTGATAATGACCATGAGCAGTCTGCTGGAAATGATAAATATCCAGCTCCTTCAACACCACAATTAAAACAGGGGGCAAGGTTACTGGATGATGGGGATTGCCATGATCAGACTAATTCCTTAACAGAAAAAGAAAGTGGGGAACATGATGGGGAATCTAAATCTGTCGAAACTTCATGTGAGAATTTGAATGGTGAAAGTTCTCCTCAACCAATTAAACCTGAGGAGACTCTGATTAAGGAGGAAGAGGATTTTGTCAATGGTTCCAAGGGTGAGAGTGTTGTTTCATTGGATCCACAGAATACAAAGTTTCTCAGCAATGCTGATGGTAACACAACTCCAAATAAAACAGGTGTTCTTAATGATTCATGTGAGAATAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCTGAACTGCACAAAAAATTTGTCAAGGCAGTGGAACAGTTGGGTATTGATCAAGCCATTCCTTCTCGAATATTGGAGCTGATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTACAGAAATATAGAATGCACAAGAGACAAATCATGCCTGGGGAAGAAGATCGAAAATGGCCAAATCAAAGAGATCCAATGCAAAGGAGCTACTGTATGCAAAGACCAATCATAGCCTACCCTCCATATCATTCTAATCACACCCTTTCACCAGCTCCTGTATATCCTATGTGGGGACAACCTGGCAGTCAAACAGCTGGTGTACAGATTTGGGGCCCTCATGGTTATCCCCAATGGCAGCCTATTGAAAGTTGGCACTGGAAGCCTTATCCAGGGGTGCATGTGGATGCATGGGGTTGCCCAGTGTTGCCACCTCCTCAAGCTCCTTGTTTTCCCTACACTCAAAATATAGCTGGGTTGCACAATGCTGCTAAAGCAGTGGATTATAGATTTGGCTTGCCACCACGAAGTTCCTTTGAGCATTATCCGGCAGAGGATGTGGTGGACAGGGTTGTGAAGGAGGCAATAAGCAAGCCATGGCTACCATTACCCTTAGGCCTGAAACCTCCATCGATGGATAGTGTGTTGGATGAGCTCTCCAAGAAAGGCATATCCAGCATACCTTTTGGCGGCAACAAGAACAAGGGTTCTAAACCCCACTGA 1725 0.4371 MVCTANDLQGWKDFPKGLRVLLLEGDSGSAAEIKAKLEAMDYNVSTFYNENDALSAISSSPEGFHVAVVEVNISSSQGGFKFLENAKDLPTISKYRTKPNFAVFYVVTSKSQCLNTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNAGASALSESLKPVKESVESMLQLQSENKQPESTISIDLENVSRYSDNDHEQSAGNDKYPAPSTPQLKQGARLLDDGDCHDQTNSLTEKESGEHDGESKSVETSCENLNGESSPQPIKPEETLIKEEEDFVNGSKGESVVSLDPQNTKFLSNADGNTTPNKTGVLNDSCENKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQIMPGEEDRKWPNQRDPMQRSYCMQRPIIAYPPYHSNHTLSPAPVYPMWGQPGSQTAGVQIWGPHGYPQWQPIESWHWKPYPGVHVDAWGCPVLPPPQAPCFPYTQNIAGLHNAAKAVDYRFGLPPRSSFEHYPAEDVVDRVVKEAISKPWLPLPLGLKPPSMDSVLDELSKKGISSIPFGGNKNKGSKPH. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00568 574 Pfam Myb-like DNA-binding domain 330 379 IPR001005 -
Seca10g00568 574 SUPERFAMILY CheY-like 16 148 IPR011006 -
Seca10g00568 574 Gene3D - 18 158 - -
Seca10g00568 574 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 562 IPR044825 GO:0003700|GO:0045893
Seca10g00568 574 ProSiteProfiles Response regulatory domain profile. 19 146 IPR001789 GO:0000160
Seca10g00568 574 FunFam Two-component response regulator 323 386 - -
Seca10g00568 574 FunFam Two-component response regulator-like APRR2 17 156 - -
Seca10g00568 574 MobiDBLite consensus disorder prediction 196 269 - -
Seca10g00568 574 MobiDBLite consensus disorder prediction 223 251 - -
Seca10g00568 574 MobiDBLite consensus disorder prediction 252 266 - -
Seca10g00568 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 324 383 IPR017930 -
Seca10g00568 574 SMART REC_2 18 142 IPR001789 GO:0000160
Seca10g00568 574 SUPERFAMILY Homeodomain-like 326 384 IPR009057 -
Seca10g00568 574 Gene3D - 323 385 - -
Seca10g00568 574 NCBIfam myb-like DNA-binding domain, SHAQKYF class 327 382 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00568 Seca-Chr10 5133660 5140169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00568 1 562 Response Regulator Gene Family AT4G18020 47.199 5.28e-138 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca10g00568 Myb_DNA-binding 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00568 - - gmx:100779121 932.939