Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00554 ATGGCGCTTTATCTTTTCTGTTTCCTTCTCATTACCATCTTGATTTTCATGCAAACTCTGGCAGATACTTCATGCACTGATTGTTTCATTCATTCTCGCGCAGCATATTACCCAAATTCTGAAGAACATGGAACAGACGTAGGTGCATGTGGGTTTGGTTCATTTGGTGCTACGGTGAATGGCGGGGATGTATCAGCTGCATCTAATCTTTATCGAAACGGTGTTGGCTGTGGTGCCTGTTATCAGGTGAGGTGCAGCAACAGTGCTTATTGTTCAGAGAAGGGTGTGACAGTAGTTATAACTGACCAAGGCTCAAGTGATAACACTGATTTCATTCTTAGTAAACATGCCTTTGGCCGGATGGCTCAGACCACTGATGCAGCTGCTTCTCTATTAGCCCTTGGCGTGGTTGATATTGAGTATAGACGTGTTGCATGCAGCTACCCAAGCAAAAACATAACAATCAAGATAGATGAGAGCAGCAGCAACCCTTATTACTTGGCTTTTGTCATATGGTATCAACAAGGAACGAGAGACATAACTGCTGTGCAGCTCTGTGAGGTACTATCTGCTACCTAA 579 0.4387 MALYLFCFLLITILIFMQTLADTSCTDCFIHSRAAYYPNSEEHGTDVGACGFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCSNSAYCSEKGVTVVITDQGSSDNTDFILSKHAFGRMAQTTDAAASLLALGVVDIEYRRVACSYPSKNITIKIDESSSNPYYLAFVIWYQQGTRDITAVQLCEVLSAT. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00554 192 SUPERFAMILY Barwin-like endoglucanases 18 150 IPR036908 -
Seca10g00554 192 Gene3D - 147 192 IPR036749 -
Seca10g00554 192 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Seca10g00554 192 CDD DPBB_EXLB_N 30 146 - -
Seca10g00554 192 SUPERFAMILY PHL pollen allergen 151 187 IPR036749 -
Seca10g00554 192 Pfam Lytic transglycolase 67 141 IPR009009 -
Seca10g00554 192 Gene3D - 17 146 IPR036908 -
Seca10g00554 192 PANTHER EXPANSIN-B3 14 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00554 Seca-Chr10 5031455 5032406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00554 4 187 Expansin Gene Family AT4G17030 43.243 2.81e-50 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00554 - - ccaj:109799868 352.829