Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00544 ATGGCCGTTCAAGCTCAATACCCCTCCAATGTACTCTTCCTAAACAGTTCTAACAGCAAAAACGAGCAAGAAGGACATGAATGTTCATTGCAACCGCAACCAGGAGGACTCCTTGATCAATCTCACATGTTTTTCAACAATGGAGGTGCTAATTCTCGGAAGAGAGGAAGAGAAGCAACAACCACCCCAATGGTTGGGCACACATCTCCAAATAATGTCATGAATCCATTCTCCTTGCAATCTCAGTCTCCACAGCTTATAGACCTAACTCAACTCCATAATCAGCAACAACAAAATCAAAATGTAGTCTCCACTGGCCTAAGATTATCCTTTGATGATCAACAACAACAACAACAAAGACTACCGTTGCATAATCATCAACAACAGCAACAACAACAAGTGTCTCAATCCTCACCTTTCTTATCTTTATTATCACAAGACTTAGCCTCACAAATCAAACAACAGAGAGATGAAATAGACGAATTTCTTCAAAATCAGGGAGAACAATTGCGGCGGACATTAGCGGAGAAGAGGCAGAGACATTATCGAGCACTTTTAAGCGCGGCGGAGGAATCGGTGGCACGGCGTCTGAGGGAGAAGGAAGCTGAGATGGAAAAGGCTATGCGGAGGAACGCGGAATTAGAGGCACGGGCGGCGCAACTTAGCGTTGAGGCGCAGGTTTGGCAAGCGAAAGCGAAGGCACAGGAAGCAACGGCTGCGGCTCTTAAAGCGCAACTGCAACAGGCTATGATGAGCGGTGGTGGTGAGGATGGTGGAGGGCTATCGTGCGCGGTGGGCGTAGAGGGACAAACGGAGGATGCTGAGTCAGCATATGTTGACCCGGAGAGAGTGGTGATGTCAGGTCCCAAATGTAGAGGTTGCGGGAAGCGTGTGGCATCGGTGGTGGTGTTGCCGTGTCGCCACCTATGCGTCTGCACTGAATGTGACAGACATTTCCGGGCATGCCCCGTTTGCCTCACTGTTAAAAATTCAACCGTTCAAGTTTTTCTATCTTAA 1017 0.4798 MAVQAQYPSNVLFLNSSNSKNEQEGHECSLQPQPGGLLDQSHMFFNNGGANSRKRGREATTTPMVGHTSPNNVMNPFSLQSQSPQLIDLTQLHNQQQQNQNVVSTGLRLSFDDQQQQQQRLPLHNHQQQQQQQVSQSSPFLSLLSQDLASQIKQQRDEIDEFLQNQGEQLRRTLAEKRQRHYRALLSAAEESVARRLREKEAEMEKAMRRNAELEARAAQLSVEAQVWQAKAKAQEATAAALKAQLQQAMMSGGGEDGGGLSCAVGVEGQTEDAESAYVDPERVVMSGPKCRGCGKRVASVVVLPCRHLCVCTECDRHFRACPVCLTVKNSTVQVFLS. 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00544 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 338 IPR013083 -
Seca10g00544 338 MobiDBLite consensus disorder prediction 44 78 - -
Seca10g00544 338 ProSiteProfiles Zinc finger RING-type profile. 291 325 IPR001841 -
Seca10g00544 338 PIRSF SBP1_RNase_bind 1 338 IPR017066 -
Seca10g00544 338 Coils Coil 190 252 - -
Seca10g00544 338 Coils Coil 145 165 - -
Seca10g00544 338 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 273 337 - -
Seca10g00544 338 Pfam Zinc finger, C3HC4 type (RING finger) 290 327 - -
Seca10g00544 338 MobiDBLite consensus disorder prediction 113 138 - -
Seca10g00544 338 MobiDBLite consensus disorder prediction 16 78 - -
Seca10g00544 338 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 36 335 IPR017066 -
Seca10g00544 338 CDD mRING-HC-C3HC5_CGRF1-like 289 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00544 Seca-Chr10 4833375 4835591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00544 287 325 C3H Transcription Factor Family AT3G06140 41.860 5.58e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00544 K19042 - gmx:100779548 390.578