Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00540 ATGAAGTGTTTATTCTTCTTCAAACAAAAATCCAAATTGGACCCAGAATTAAACCGAAGCAAGAAGAAAAATCAGGTGGTGAATCGAGCCACAAGGTCCCCCAATATGCAGTCATCGCCGAAGAGCGTAAAAGAATTGTACAAAGAGAAAGAGCACAATTTCAGAGTTTTTACTTTGCAAGAGCTCGTAGATGCAACAAATGGTTTCAATAGGATGCTGAAGATTGGAGAAGGGGGTTTTGGGAAAGTATACAGAGGAACAATTAGTCCTCAAAACGGACAAGGTGACCCAATTGTGGTTGCAATCAAAAAACTTAACACTCGTGGCTTACAGTTTGTTTTTTTCCCCTTTGTAAAGGGGCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATTGTCAATCACCCGAATTTGGTTAAGCTTTTGGGATACTGCTCTGTAGATAGTGAAAGAGGAATCCAACGGCTGTTAGTGTATGAGTTCATGTCCAATAGGAGCCTGGAAGATCATCTTTTCAGTCGTTCTTTACCTCCATTGCCTTGGAAAGCAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTACAGTATCTACATGACGGATTGGAGGTTCAGGTGATCTACCGAGATTTCAAATCTTCAAATGTGCTGTTGGACACGAAATTCCACCCCAAGCTCTCAGATTTTGGTCTTGCTAGGGAGGGCCCAACAGGCGATCAGACTCATGTATCTACTGCGGTAGTGGGGACACAGGGATATGCTGCCCCAGAGTATGTTGAAACAGGTCACCTCAAAATTCAGAGTGATATTTGGAGTTTTGGTGTGGTACTTTATGAGATCCTCACAGGGAGGCGAACATTGGAAAGAAACCTTCCAACAGCGGAACAAAAGCTTATAGAATGGGTTAAAAATTACCCTGCTGACAGTAGCAGATTCAGCAAGATAATGGATCCACGTCTCAGGAATCAATATTCTCTTGATGCAGCTAGGAGAATAGCCAGGTTGGCAGATAGCTGCTTAAAGAAGAATCCTGAAGATAGGCCATCCATGAGTCAGATAGTGGAAAGTTTGAAGCAAGCATTGCAGTGTTCACAAACAGAAACTTCAAACTCAAATACTACTCAGTCTCAGAATATGACTTCTCAATCCCCTCGGTCTAAATTGGTACGGAAGTGA 1179 0.4249 MKCLFFFKQKSKLDPELNRSKKKNQVVNRATRSPNMQSSPKSVKELYKEKEHNFRVFTLQELVDATNGFNRMLKIGEGGFGKVYRGTISPQNGQGDPIVVAIKKLNTRGLQFVFFPFVKGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDSERGIQRLLVYEFMSNRSLEDHLFSRSLPPLPWKARLQIMLGAAQGLQYLHDGLEVQVIYRDFKSSNVLLDTKFHPKLSDFGLAREGPTGDQTHVSTAVVGTQGYAAPEYVETGHLKIQSDIWSFGVVLYEILTGRRTLERNLPTAEQKLIEWVKNYPADSSRFSKIMDPRLRNQYSLDAARRIARLADSCLKKNPEDRPSMSQIVESLKQALQCSQTETSNSNTTQSQNMTSQSPRSKLVRK. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00540 392 PANTHER OS01G0588500 PROTEIN-RELATED 33 362 - -
Seca10g00540 392 MobiDBLite consensus disorder prediction 362 392 - -
Seca10g00540 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Seca10g00540 392 ProSiteProfiles Protein kinase domain profile. 69 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00540 392 Gene3D Phosphorylase Kinase; domain 1 40 162 - -
Seca10g00540 392 MobiDBLite consensus disorder prediction 17 42 - -
Seca10g00540 392 MobiDBLite consensus disorder prediction 27 42 - -
Seca10g00540 392 Gene3D Transferase(Phosphotransferase) domain 1 163 387 - -
Seca10g00540 392 ProSitePatterns Protein kinases ATP-binding region signature. 75 104 IPR017441 GO:0005524
Seca10g00540 392 SUPERFAMILY Protein kinase-like (PK-like) 51 358 IPR011009 -
Seca10g00540 392 Pfam Protein tyrosine and serine/threonine kinase 74 358 IPR001245 GO:0004672|GO:0006468
Seca10g00540 392 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 163 373 - -
Seca10g00540 392 CDD STKc_IRAK 75 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00540 Seca-Chr10 4782021 4785204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00540 1 358 Glycoside Hydrolase AT3G07070 41.892 1.35e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca10g00540 PK_Tyr_Ser-Thr 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00540 - - gmx:100305403 593.964