Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00539 ATGCAGATGAAGGGCATTGCAGGGAGAACTCGCTCTTCTACTAAACGCAAATTAATCGATGAGGTTGTTGATTGCACTTCCCTCGACGACGATGACGTCATTGTTATTCAACAAGAGAGCGAGCGTGTTGACGAAGATCAAAGAAAAACCAAGTTCAAGCGCCAAAAGGAAATCGCCAACGGTGACTCTGGAACGATAAAGAGGAGGAAATCGTACGGTCTCGATATATTGATCGACGACAATGCCAAGGAGAAGAGTGCGTGTGTGGCACCAGCACAGAGGACTCGTTCCCATTATCGAAAGATTAACAAGATTTTGAAGTTGGGAACTTTGAGCAAGCCTATATGTCTTGATGAAGAAGAGAATCTTATCTATCTCTCTGAGTCTGATCATGATTCTTGTGGGGTAAGTGGTTTTTTTGATGATGATGATGATGATGATGAAGAAGAATGTAGTAGTGGTGACGATAGTGAAAGGGAAGGGAAGGAGGGGAAAAAACGAATTAATGACTCACAAGTGTTTAAGGTTCTTCGGGATTCTGTGTATGGGAAGGAATCGAATTTAAATGTGGATTTGCCTTTAAAGTTTTCTTCTTTAGGTAAGGAGTCAACACCGGAGAAATCAGTGTTTGAGACAGAGTTAGATCAACTTTGGGATGAGATGGCCTCTGTTCTTCAAGAGGGAAGTGGTTCTGTTCAAGAAAATTCCAATGGTGGCAGTAGAGAATGTGTCCATGGTGAGAGAGGGGCAAGAGGTGATGAACTGAATGCAAAGAAAGATTTGCTGCCATTGGAGTTTTGTTTTCAAAAGGAGAAGCCAAAACCAGCTGAGAAGTCAAAAAAGGAGAAAGAATTAGATGCACTTTGGCTTGAGATGGACTACTGTATTGCTCTTATTGCCCAAGACAATCAGGTTCAGAATGATACTGATTCTGATCATGATCAATATCCAACGGGTGAAGTTACACAAGTTACCCTTTGTCGTCAAGGGAAGCATGATCTCATTCTTGATGAGCAAATTGGACTAATATGTACATGTTGCTCACATATACAAGTACATATCAGGGATTATTCACCTCCTGTTATTGAAAATCCCCGGGGTAAGTCATACAGGAGAGACTCTTACACTTTGGACCATGTGAATCACTCTGTTATCAAGGAGCTTCGGCATGGAGTTGGTGGACATGATGATGATCATAACCCCAGTGATTACACCGGGACAGTGTGGGATATAATTCCTGGAGTCAAGAAAACTATGTATCCTCATCAGTGTGAGGCTTTTGAATTTCTCTGGAGTAATTTAGCTGGTGGAATTCTTCTTGATAAGTTGAAAGAGCAAAAGGAATTTGCTGGTGCGAGTGGGTGTCTTGTATCTCATGCTCCTGGCACTGGGAAAACCCGTCTCACTATTGTGTTTCTTCAGACATACATGGAGTTATATCCAACATGTAGACCAATAATTATTGCTCCCACAGGTATACTTCGTACATGGGAAGAGGAATTTAAAACATGGAAGGTTGACATTCCCTTTTACAATTTGAACAATTCTGACTACTCTGGCAAGGAGAGTGAGGTAGCTATGAATCTTATTAAGAATGTCTCAAGTAATGCAGCTAAGTCATATTGTCGTTTAGTCAAGTTGTATTCCTGGAAGTATAACAAAAGCATCTTGGGAATTAGCTACAAACTGTTTGAGCATCTTACTAGGGAGGGCTCAGATGAAAGGGAACTCCTTCTTGAACATCCTGGTTTATTAGTTCTGGATGAGGGTCACACTGCCCGTAGTTCTCGAAGTTTTATATTGAAAGCTGTCTCAGAAGTCCAGACAAAAAGACGCATCATCCTCTCTGGAACTCCCTTTCAGAATAACTTTGAAGAGCTATACAACACACTCTGCTTGGCAAGGCCTAAGTTTGCTGAATGGAATCCATCTGGGGGCAAGGTGGTATTTGATGACAAGCGGGGGAACCCAAGAAATGAAAGCAAAGGGAAATGGGTGTCTCTGGCCAATTCATTAGGCAAAGTTACTGATGATAGTGAAAGATTTAAGATATCAGAAGAGATTAGAAACATGATTCTTCCTTTTGTTCATGTGCACCAGGGAACCATACTGCAAGAGAGTCTACCTGGTTTGAGGAAGTTGGTAATTATTTTGAAGCCAACACAGTTGCAGAAGGAGGTTTTTGAGGATATTCAGAAAAAAAGGAAAAGCCTTGCATGGGATGTGCTAAAACTAGAATATGAGGAGTCTGTAACTGCTATTCATCCTGCCCTCTTTGGTCTATCTGAATGCAACAAATTTGAAAGGTTTAGATTGAATCCTGAGGAAGGTGTAAAAACTAAATTTGTAATGGAACTTATCAGGCTTAGTGGGCTTGTGAAGGAAAAAGTTTTGGTTTTTAGCCAATACATTGATCCTTTGAAGCTTCTGGCAAGCCAACTTAAATATCATTTTGGTTGGAATGAAGGAAGAGAGGTGTTACAAATGCATGGAAAAGTTGATGCAAAGCAGCGTCAAGCTTCAATCAGAGATTTTAACGATCCCGGTGGCAAAGTGAAGGTAATGTTAGCATCAACCAAGGCTTGTTATGAAGGAATCAGTTTGGTTGGTGCCTCAAGGGTTGTTTTACTTGATGTTGTATGGAATCCCTCAGTGGAGAGGCAAGCTATAAGTCGTGCTTACCGGCTTGGACAGAAGAAATTTGTGTACACTTACCATTTGATCACAGCAGGGACAAGGGATGAGGAGAAATGTTGTCGGAAAGCTCAGAAAGATCACCTATCCCAGTTGGTGTTCTTTAATTCTGATGGGGCTCAGCATTGTCAAAATTTTTCATCTGCAGAATTGGAGGATCAAATTTTGGAAGACATGGTTCAACATGAAAAGTTTGGACATATATTTGAAAAAGTAGCTATTAACTATCAAGAAACAAACTCTACCTTGAAGAGGGATTTTTTCTCCCTCTTGGTATAA 2973 0.4083 MQMKGIAGRTRSSTKRKLIDEVVDCTSLDDDDVIVIQQESERVDEDQRKTKFKRQKEIANGDSGTIKRRKSYGLDILIDDNAKEKSACVAPAQRTRSHYRKINKILKLGTLSKPICLDEEENLIYLSESDHDSCGVSGFFDDDDDDDEEECSSGDDSEREGKEGKKRINDSQVFKVLRDSVYGKESNLNVDLPLKFSSLGKESTPEKSVFETELDQLWDEMASVLQEGSGSVQENSNGGSRECVHGERGARGDELNAKKDLLPLEFCFQKEKPKPAEKSKKEKELDALWLEMDYCIALIAQDNQVQNDTDSDHDQYPTGEVTQVTLCRQGKHDLILDEQIGLICTCCSHIQVHIRDYSPPVIENPRGKSYRRDSYTLDHVNHSVIKELRHGVGGHDDDHNPSDYTGTVWDIIPGVKKTMYPHQCEAFEFLWSNLAGGILLDKLKEQKEFAGASGCLVSHAPGTGKTRLTIVFLQTYMELYPTCRPIIIAPTGILRTWEEEFKTWKVDIPFYNLNNSDYSGKESEVAMNLIKNVSSNAAKSYCRLVKLYSWKYNKSILGISYKLFEHLTREGSDERELLLEHPGLLVLDEGHTARSSRSFILKAVSEVQTKRRIILSGTPFQNNFEELYNTLCLARPKFAEWNPSGGKVVFDDKRGNPRNESKGKWVSLANSLGKVTDDSERFKISEEIRNMILPFVHVHQGTILQESLPGLRKLVIILKPTQLQKEVFEDIQKKRKSLAWDVLKLEYEESVTAIHPALFGLSECNKFERFRLNPEEGVKTKFVMELIRLSGLVKEKVLVFSQYIDPLKLLASQLKYHFGWNEGREVLQMHGKVDAKQRQASIRDFNDPGGKVKVMLASTKACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEEKCCRKAQKDHLSQLVFFNSDGAQHCQNFSSAELEDQILEDMVQHEKFGHIFEKVAINYQETNSTLKRDFFSLLV. 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00539 990 MobiDBLite consensus disorder prediction 136 166 - -
Seca10g00539 990 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 446 637 IPR014001 -
Seca10g00539 990 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 261 972 IPR044567 GO:0080188
Seca10g00539 990 SMART ultradead3 415 650 IPR014001 -
Seca10g00539 990 Pfam Helicase conserved C-terminal domain 790 897 IPR001650 -
Seca10g00539 990 CDD SF2_C_SNF 779 908 - -
Seca10g00539 990 MobiDBLite consensus disorder prediction 139 154 - -
Seca10g00539 990 MobiDBLite consensus disorder prediction 229 248 - -
Seca10g00539 990 Gene3D - 709 983 IPR027417 -
Seca10g00539 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 932 IPR027417 -
Seca10g00539 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 639 IPR027417 -
Seca10g00539 990 Pfam SNF2-related domain 451 737 IPR000330 GO:0005524|GO:0140658
Seca10g00539 990 SMART helicmild6 808 897 IPR001650 -
Seca10g00539 990 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 785 938 IPR001650 -
Seca10g00539 990 Gene3D - 397 664 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00539 Seca-Chr10 4762719 4766764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00539 784 951 RAD5 or RAD16-like Gene Family AT5G43530 35.714 3.29e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca10g00539 SNF2_N 6.6e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00539 K10875 - mof:131164512 756.903