Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00534 ATGGAGGAACGGTATGAGCCATTGAAGGATCTTGGTTCGGGGAACTTTGGAGTGGCCAAGCTAGCCAAAGACAAGAACACAGGGGACCTTGTTGCTGTCAAATACATTGAAAGGGGAAAAAAGCCCTTTCTTCTGAGTGAGTTATGTTTGTGGAATCAGATTGATGAGAATGTTCAAAGGGAGATAGTTAACCACCGATCTCTAAGGCATCCAAATATTGTCAGGTTCAAAGAGGTATTTCTGACCCCTACTCATTTAGCTATTGTCCTGGAGTATGCTGCTGGTGGTGAACTCTTTGAGAGGATATGCGCCGCTGGTCGATTGAGTGAAGATGAGGCAAGATATTTCTTCCAGCAACTATTATCTGGAGTTAGCTACTGTCATTCCATGCAAATTTGTCATAGAGATCTGAAATTGGAAAACACTCTGTTGGACGGAAATCCAGCTCCAAGACTTAAAATTTGTGACTTTGGTTTCTCCAAGGTTAATGATAGCATTATTAATATTCAATTGCAGTCCGCTTTGCTGCACTCTCAACCTAAATCCACAGTTGGAACTCCTGCATACATTGCTCCAGAGGTTTTGTCACGAAAGGAGTATGATGGAAAGATTGCAGATGTTTGGTCGTGTGGTGTGACTCTTTATGTCATGTTAGTTGGATCATACCCATTTGAAGATCCAGAAGATCCTAGAAATTTCAGAAAGAATGTTGGGAGAATAATGAGTGCTCAATACGCCATACCTGACTATGTACGTGTATCTGCAGAGTGTAGGCATCTTCTCTCTCGTATCTTTGTTGCCAATCCTGCCAAAAGGATCACCATCTCTGAGATAAAACAACACCCTTGGTTTCGGAAGAACTTGCCTAGAGAGATAATTGAGGCTGATAAAAAAGGTTACGAGGGAACAGAGAAAGACCAACCAAGCCAAAGTGTAGAAGAAATCATGCGAATCGTACAAGAGGCAAGGACACCAGGGCTAAAAACCACAGGCTCATCGGATGCTGTGGATGTTGATGAGACTGTTGAGGAAGTTGATGTCAGTGGCGACTATGCAAAACTCGTGTAG 1068 0.4279 MEERYEPLKDLGSGNFGVAKLAKDKNTGDLVAVKYIERGKKPFLLSELCLWNQIDENVQREIVNHRSLRHPNIVRFKEVFLTPTHLAIVLEYAAGGELFERICAAGRLSEDEARYFFQQLLSGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKVNDSIINIQLQSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGSYPFEDPEDPRNFRKNVGRIMSAQYAIPDYVRVSAECRHLLSRIFVANPAKRITISEIKQHPWFRKNLPREIIEADKKGYEGTEKDQPSQSVEEIMRIVQEARTPGLKTTGSSDAVDVDETVEEVDVSGDYAKLV. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00534 355 PANTHER SERINE/THREONINE KINASE 3 310 - -
Seca10g00534 355 CDD STKc_SnRK2 4 283 - -
Seca10g00534 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Seca10g00534 355 Gene3D Transferase(Phosphotransferase) domain 1 93 292 - -
Seca10g00534 355 SMART serkin_6 5 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00534 355 FunFam Serine/threonine-protein kinase SRK2E 93 292 - -
Seca10g00534 355 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Seca10g00534 355 SUPERFAMILY Protein kinase-like (PK-like) 3 291 IPR011009 -
Seca10g00534 355 ProSiteProfiles Protein kinase domain profile. 5 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00534 355 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Seca10g00534 355 Pfam Protein kinase domain 5 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00534 Seca-Chr10 4724607 4728932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00534 4 287 CBL-interacting serine-threonine protein kinases AT5G35410 42.254 7.79e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca10g00534 Pkinase 1.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00534 K14498 - gmx:547790 557.755