Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00531 ATGAATCCACAGAACCTGACACCTATGAATTTACTCTCCCAGCAAGTTGCTTATCATCCTCGTCTCTTTGTAGAAGAGATTTCAAACATGGGGAATTCTAGTGTAATGAAGCCTGTGACCATGGAGCCTAAAGGTTCACAGATGACAATCTTTTATGCTGGGCAAGTTATGGTCTTTGATGATTTGCCAGCTGACAAAGCCAAGGAGATCATGTCCTTTGCCAGCAAAAAAACCTCTGAAAACCAGAACAACAATTATGCTTCTACATTCCTTCAGAGACACCCCTCATTTCCTGCCAGAAGTTCTCCTAGTTTCATCACTAGGCCATTCCCTTTTCATTTGAATATCATCCCTACCACTCCCAACAATTCTGTTCAAGAGCACCCTCAACAATCATCCACACCTGTTGTTTATGATCTACCAATGACTAGGAAAGCTTCACTTCATCGGTTCTTAGAGAAAAGGAAGGATAGAATTGCTTCCAGATCACCATATCAAACAAGCAATCCCATGGCAGCCTTTAGTAAGCAAGCTGATGAATCAATTTCATGGCTCGGCTTGGCACAACAAGACAAATCTGAGAGTAGCTCCAGCTCTGTGTTATTTTAA 609 0.4187 MNPQNLTPMNLLSQQVAYHPRLFVEEISNMGNSSVMKPVTMEPKGSQMTIFYAGQVMVFDDLPADKAKEIMSFASKKTSENQNNNYASTFLQRHPSFPARSSPSFITRPFPFHLNIIPTTPNNSVQEHPQQSSTPVVYDLPMTRKASLHRFLEKRKDRIASRSPYQTSNPMAAFSKQADESISWLGLAQQDKSESSSSSVLF. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00531 202 ProSiteProfiles Tify domain profile. 41 76 IPR010399 -
Seca10g00531 202 SMART tify_2 41 76 IPR010399 -
Seca10g00531 202 Pfam Jas motif 141 166 IPR018467 -
Seca10g00531 202 Pfam tify domain 42 75 IPR010399 -
Seca10g00531 202 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 30 174 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00531 Seca-Chr10 4714966 4716370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00531 4 190 Tify Gene Family AT1G19180 36.649 3.67e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca10g00531 tify 3.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00531 K13464 - gmx:100306332 220.705