Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00525 ATGAATTTGGAGTCATCAAGAGCAATGACAACATCAGTCAATAAAAGTCATTCTGAAGAAAGATTTGGGAAGCCATTGATGGAAAATGGGAACTGCACTCCGCTTGTTCGGCCCATGTATAAGCGGCGTAAAGTTTCCGCCATTCGTGATTTCCCAAAAGATTGTGGACCGTGTGCTTCAAAAATTGATCCAGTGTTAAAGGTAGATAATGCTGATTTTGGTTCTGCTAATGGTACAATTGTTGAGGATAAAAATGGTGAATGTTTAGGGGGTGACACTGTTAGAATTTCCAAGTGTGGAGATGATCCTCAACATTCTGAGTTAAGAAAAGATTCGATTCATTTTGAGACTCTTGGCCAAACATTTGACTGTAGTATGAAGAAAGAAAATCCTGTAGTCTCAACTCATCAAGTGGATGGGCCTACTTCAGCAAATGATGATCCTGGAAAAGTGGCACCGGTAGGCATGGAGGTGTTGGATACAGAATTTGCAACAGAAAACTCTGTAGAACATGACTCTTATATATCAAAGCCATCTTCTACAGTGGGTGAGGTGGCTATGTCTGATGGTGAAAAATCATTATTATTGAATGTCTATTTAGCTGGTTCTAGTGCTTGTTTGGAGGAGAGTGTAACTAGAAGGTATCTTCCTCGAAGAAAAGTTTCAGCTGTCAGAAACTTTCCTCTTTTTTGTGGACGCAATGCTCCACGTCTCAGTAAAGATGAGTGTCAAATGAAGATCTCTTCTTTGAATAATAAGAGAGTGGGTCAACAGAACTTGGCTGTAGATGGCAATCCATTGAAAAGAGTAGCAGGCACTGATGTAAAAGAAGTGGAAAATAACATTCAAGCTGAACATGGTTGCAAGAGAAAGCTTGCGGACATTGTTCAAGCTGATTCTGGAGGGAATCCTACAGAGAAAGTTAAGATGTCGGGTGTATTTGAACCATGTTCTGCGTCGAAATTGCCACTGGAAAACACAAGAGAAAAGTACAATACCCTTCCTGAAAAAAGTAATCATCATCAGGTTGAAATTAATTCCAAGGCAGTTGTTAAAGAGGAAACTAGAGATACTGTACAGGTTGAGGGAACATCAGGGCTAGAGTTGATAGTTTACCCAGAAGTCCAGGGTCGTGAGACAAAGCCTTTGGATATGTCTAGTTATCAGCGTGAGTCAAAAGGAAATTTGAATAGATTGGTGGTCTCATCAGACAGGAAAGTAGTGTTAGGTCTGATGTCTGAATCAGAGTGTCCTTCAAGGTCTGCTGATAAAGGTTCTTCCAAATTTAAGTTGATTGGTGGTACAAATGAAAGCAAGGGAAAGAAAGTTGATTTTGCTGCACGGCTAGGCAGGTCTAAAACTGCTATCAAGACTAAAGATGCACGGAATCATTCTGGGCAGAAGCTGTTGAAAAAGAAAAAAGAAAACACTGCTTCTGATGATATGGGTCAATTAGTGATTTGGGAAAAAGATTCTCCTGACCCTAATGAAAACAACAAAGACTTTCAAATTGTCCCAAAATCACATGGTTTGGATGTATATGTTCCTCCTTTGGATTATCGTAATTCCAGTGGTCATGAGAATGACTCAAATGTGACCCGAAATAAAGTGAGGGAAACATTACGCCTTTTTCAAGCTGTTTCTAGAAGGCTTTTGCATGAAGTTGAAGCTAAGTCAGATGAGAAATCAAATAATAAAAAGAGGATTGATTTACATGCTGCGAAGATCCTTAAGGAGAAAGGGAAATATGTTAACATAGGCAAGCAGATCTTGGGATCTGTTCCTGGGGTTGAGGTTGGTGATGAATTTCAGTACAGGGTGGAGCTTACTGTAATTGGCCTTCATCGCCAGATTCAGGGAGGTATAGATTATGTAAAGCACAATGGGAAGATCCTTGCAACTAGTATTGTTGCATCAGGGGCCTATGCTGATGAGTTGGATAATTCAGATGTTTTGATATATACAGGGCAGGGTGGGAATGTGATGAGCACTGATAAAGATAAAGAACCTGAAGATCAAAAGCTTGAACGGGGCAATCTTGCTTTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGGGTGATACGTGGCTCCGAATCAATGGATGGAAAATGTAAGACTTATGTTTATGATGGACTGTATCTTGTTGAGTCATGTTGGCAGGATATGGGGCCACATGGGAAACTGGTTTATAGGTTTCGCCTGCGAAGAATCCCAGGTCAACCAGAGCTTGCTTTAAAGGAAGTGAAGAAATCTAAAAAGTTCAAAACAAGAGAAGGTCTATGTGTTGATGATATTTCTTATGGTAAAGAGCGAATTCCCATATGTGCTGTGAACACCGTAGATGATGAAAAACCCCCACCCTTTACATACATAACTGACATGATTTATCCTGATTGTTGCAATCTTGTTCCTCCAGAAGGATGTAATTGTACTAATGGATGCTCTGACTTGAAGACATGTTCTTGTGTAGTAAAAAATGGGGGAGAGATCCCATTCAACCATAATGGGGCTATTGTAGAAGCAAAGCCTTTAGTCTACGAGTGTGGACCTTATTGTAAGTGCCCTTCAACCTGCCATAACAGAGTCAGCCAGCTTGGAATAAAGTTTCAACTTGAAATTTTTAAAACCGATACAAGGGGATGGGGTGTAAGATCCCTAAATTCCATCCCTTCAGGAAGTTTTATCTGTGAATATATAGGAGAGGTTCTTGAAGAAAAGGAAGCTGAAGAAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTACAGCAACAGTAATCTTTGGGATGGACTTTCGACCCTCATGCCAGATGCACAATCAAGTTCTTCTGAAGTTGTGAAGGATGGTGGCTTCACCATTGATGCAGCCCAGTTTGCTAATGTGGGGAGATTCATCAACCATAGTTGCTCCCCTAATCTTTATGCTCAGAATGTCCTTTATGATCATCATGACAAAAGGATCCCTCACATAATGTTCTTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGGCTTATGATTACAATTATATGATGGATCAAGTCCGTGATTCTGATGGCAATATAAAAAAGAAAGAATGCTTTTGTGGTTCTGTGGAATGTACTGGTAGGATGTATTGA 3132 0.4007 MNLESSRAMTTSVNKSHSEERFGKPLMENGNCTPLVRPMYKRRKVSAIRDFPKDCGPCASKIDPVLKVDNADFGSANGTIVEDKNGECLGGDTVRISKCGDDPQHSELRKDSIHFETLGQTFDCSMKKENPVVSTHQVDGPTSANDDPGKVAPVGMEVLDTEFATENSVEHDSYISKPSSTVGEVAMSDGEKSLLLNVYLAGSSACLEESVTRRYLPRRKVSAVRNFPLFCGRNAPRLSKDECQMKISSLNNKRVGQQNLAVDGNPLKRVAGTDVKEVENNIQAEHGCKRKLADIVQADSGGNPTEKVKMSGVFEPCSASKLPLENTREKYNTLPEKSNHHQVEINSKAVVKEETRDTVQVEGTSGLELIVYPEVQGRETKPLDMSSYQRESKGNLNRLVVSSDRKVVLGLMSESECPSRSADKGSSKFKLIGGTNESKGKKVDFAARLGRSKTAIKTKDARNHSGQKLLKKKKENTASDDMGQLVIWEKDSPDPNENNKDFQIVPKSHGLDVYVPPLDYRNSSGHENDSNVTRNKVRETLRLFQAVSRRLLHEVEAKSDEKSNNKKRIDLHAAKILKEKGKYVNIGKQILGSVPGVEVGDEFQYRVELTVIGLHRQIQGGIDYVKHNGKILATSIVASGAYADELDNSDVLIYTGQGGNVMSTDKDKEPEDQKLERGNLALKNSSEEKNPVRVIRGSESMDGKCKTYVYDGLYLVESCWQDMGPHGKLVYRFRLRRIPGQPELALKEVKKSKKFKTREGLCVDDISYGKERIPICAVNTVDDEKPPPFTYITDMIYPDCCNLVPPEGCNCTNGCSDLKTCSCVVKNGGEIPFNHNGAIVEAKPLVYECGPYCKCPSTCHNRVSQLGIKFQLEIFKTDTRGWGVRSLNSIPSGSFICEYIGEVLEEKEAEERTGNDEYLFDIGNNYSNSNLWDGLSTLMPDAQSSSSEVVKDGGFTIDAAQFANVGRFINHSCSPNLYAQNVLYDHHDKRIPHIMFFAAENIPPLQELAYDYNYMMDQVRDSDGNIKKKECFCGSVECTGRMY. 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00525 1043 SUPERFAMILY PUA domain-like 573 750 IPR015947 -
Seca10g00525 1043 ProSiteProfiles Post-SET domain profile. 1027 1043 IPR003616 -
Seca10g00525 1043 ProSiteProfiles SET domain profile. 870 1013 IPR001214 GO:0005515
Seca10g00525 1043 SMART set_7 870 1019 IPR001214 GO:0005515
Seca10g00525 1043 SMART preset_2 763 854 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca10g00525 1043 ProSiteProfiles Pre-SET domain profile. 807 867 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca10g00525 1043 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 393 1036 - -
Seca10g00525 1043 MobiDBLite consensus disorder prediction 1 26 - -
Seca10g00525 1043 Pfam Pre-SET motif 766 862 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca10g00525 1043 Pfam SAD/SRA domain 591 741 IPR003105 -
Seca10g00525 1043 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 447 1043 IPR025794 GO:0016571
Seca10g00525 1043 SMART PostSET_3 1027 1043 IPR003616 -
Seca10g00525 1043 SMART G9a_1 587 741 IPR003105 -
Seca10g00525 1043 ProSiteProfiles YDG domain profile. 592 737 IPR003105 -
Seca10g00525 1043 MobiDBLite consensus disorder prediction 1 16 - -
Seca10g00525 1043 Gene3D SET domain 758 1043 IPR046341 -
Seca10g00525 1043 Gene3D - 574 757 IPR036987 -
Seca10g00525 1043 Pfam SET domain 881 1013 IPR001214 GO:0005515
Seca10g00525 1043 SUPERFAMILY SET domain 753 1014 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00525 Seca-Chr10 4667452 4672579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00525 531 1040 Su(var)3-9 homologs AT5G04940 41.794 6.33e-121 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca10g00525 SAD_SRA 1.4e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00525 K11420 - gmx:100803378 1278.08