Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00524 ATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGACCACCCGAGAAGCCAGTACTATGCAATGCATGTGGGTCTAGGTGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAACTGATGATTATGAGGATCAAAGGGCTCCGAGGGTAAAGAGTATATCGTTGAATAAGAACAAAGAAGTGAAATCACTCAAACGAAAGCAGAACCATGATAATGTAGTATCTGGAGGCCTTGCACCTGATTACAACCAGGGATTCCAAAAGGCTGTAGATGAAGATACAAGCAATCGGTCAAGTTCAGGATCAGCCATCTCTAACTCAGAGAGCTGTGCACAATTTGGTGGCACAGATGCTAGTGATCTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGTGGGTCGACCAAAGCCTTCTTCTGTTGAGAAGCTCACAAAAGATTTATGCACTATTCTTCACGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAAGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGGCATGGAAGTGTTCTCATTAGGCACCCTAGTTATATAGCTCGTGAAGAAGAATCTGAGGCTAGCTCTCTTTCATTTGATAATAAACAATGCCTATTGAGTGAGGCATATACATCTTCTGGTGTCATTCTTATGCATAATGATTCTAGTGATATGAAGTTCTCATCTCAGGGAGTTGAAAAGGTCAGGAGCTCTGCTGGCCAAGGAATGCAGCAGGAGCTAATTATTAAAAGTGACAAGTCTCAGCTTGAAAGAGTACAGATCCTTGGAAATCATGATTCACCACTGTGCGCAATAGATTTGAATGATGTAGTGAACTATGACGAGTTTTTCAGTACCTTGACAAATGAAGAGCAGCAGCAATTACTGCAATTTCTTCCTGTGGTTGATACGGCTAATATTCCTGATAGCCTTAAAGTCATGTTCGATAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGCGGTGGGTGTCTTTGATATCTCTTTGTCAGGGGCAAAACCTGAAGACTGCAACACTTTGAAAAGACTTGCATTATCCAATCTGTCAAAATCAAAATGGGTAGAACACTACTATTTTCTAAAGAGATGTCAAAACAGAGCTGGAAAATCTGGTACTCCAGGATCTAGTGGTACAGAATCAACTAATGTTGCAAACATCGAGAGAATGCGTGATAGTCGATATCAAAACTTTCCAGAGAAGAAGACAATAATAAGGAGCCCCAAAAGAGTGATCACAAAGGGTGGCTGTGAGGGCAAAGAAGATGGTGAAGATGGTGCTTGCTATACTCCAAAAAGGCTATTTCCTTTGCCTCCTGCTGCTAGCTCACTCTTGATGGATTCTTTAAACTTTGCTGGGGAGAGTTCTGATCAGGATCTGCTGCTAGAGGTTCCATCTAATAGTTCTTTTCCACAAGCAGAGCTCCTGTACCCAACTTTAAGCTTTGGTGCTCAAGCCAGCACTAGTAGTAGCTCAGCATACCCTCATCTTGTCCATCATTAA 1626 0.425 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDYEDQRAPRVKSISLNKNKEVKSLKRKQNHDNVVSGGLAPDYNQGFQKAVDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCVGRPKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSVLIRHPSYIAREEESEASSLSFDNKQCLLSEAYTSSGVILMHNDSSDMKFSSQGVEKVRSSAGQGMQQELIIKSDKSQLERVQILGNHDSPLCAIDLNDVVNYDEFFSTLTNEEQQQLLQFLPVVDTANIPDSLKVMFDSSQFKENLTYFQQLLAVGVFDISLSGAKPEDCNTLKRLALSNLSKSKWVEHYYFLKRCQNRAGKSGTPGSSGTESTNVANIERMRDSRYQNFPEKKTIIRSPKRVITKGGCEGKEDGEDGACYTPKRLFPLPPAASSLLMDSLNFAGESSDQDLLLEVPSNSSFPQAELLYPTLSFGAQASTSSSSAYPHLVHH. 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00524 541 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Seca10g00524 541 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Seca10g00524 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Seca10g00524 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 539 IPR044589 -
Seca10g00524 541 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Seca10g00524 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Seca10g00524 541 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Seca10g00524 541 MobiDBLite consensus disorder prediction 103 124 - -
Seca10g00524 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Seca10g00524 541 MobiDBLite consensus disorder prediction 77 124 - -
Seca10g00524 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Seca10g00524 541 Pfam Asx homology domain 287 368 IPR028020 -
Seca10g00524 541 FunFam GATA transcription factor 27 3 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00524 Seca-Chr10 4653493 4662068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00524 1 518 C2C2-Gata Transcription Factor Family AT4G17570 53.042 1.15e-160 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca10g00524 ASXH 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00524 - - gmx:100803914 839.721