Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00509 ATGTCTGTGTGGGCATTTGAAAGACATGCAAATAGTGATCACAGAAAACCCTATGAACGTATTTACATCCTCCAAACACAAGAAAATCTCCAAGATTGCCTCATTGCTGTCTGGCTTCATTCAACTGAAAGAGAACGCCGTGAAGAATTCTGCTTTTTACCCAAGGAAAAACAACAAGATGATCCTTGTTCAATATGTGCAAATGGGGGAGACATATTCCACTGCGAGCATTGTCCCTCAGCATTCCATGCATCCTGTATGAATATGGAGAGGGCTCCCCGTCGTGATTGGTCTTGTCCCTACTGCGTTTGTAAGTACTGTAGTCTCAGGGTTTATGGAAAACAAAGGCAACTCATCACATGCTTGCAGTGTGACAAAAATTTTCACTGGCAATGTTTAAAAGAATTCTCCAAAGACCCTGTGGATATTAGCGGGGACCTACTGTATTGCAGCCAAAGCTGCAAAGAGATATATGATGAACTGGAGAGGTCAATTGCAGTCAATAGCGAGTTTGAAAACTACACTTGGTCAATCATCCGCCCTCAGACAACCTTAGCTATGACTAGATATTTTGAATGCAATGCAAAGGTCCTAGTAGCTTTCTCATTAATGAATGAATGTTTCCAAACAATAACTGACAGACACACAGGCATCAATGTGGTTCAAAATGTACTATACAGTTGTAGATCACCAGATTTAACCAGGGTCAATTTTGGGCGTTTTCATATATTTATCTTGGAGAAAGATGATGCAATTGAATGCGCAGCTTCTATAAGAATTCATGGGAGGGAGGTTGCAGAAATGCCTTTTATTGCCACAGAAGGGACATGCAGGAGACAAGGAATTTGCAGGAATTTAATGATTGTAATTGAATCGTTCCTATGTGCCCTTAAAGTGCAGAAGCTGGTCATTCAATCTGTTCCAGATACTTCGGATATGTGGAAGCACAAGTTTGGTTTCAAAGAACTGGCTGGGAAATTTGAGAAAGAACTTGCCTCCTATAACATTTTGACGCTCCCTCATGCTTCAAAACTATACAAAGACTTGGGTGGTAATCCAAATTGA 1065 0.4075 MSVWAFERHANSDHRKPYERIYILQTQENLQDCLIAVWLHSTERERREEFCFLPKEKQQDDPCSICANGGDIFHCEHCPSAFHASCMNMERAPRRDWSCPYCVCKYCSLRVYGKQRQLITCLQCDKNFHWQCLKEFSKDPVDISGDLLYCSQSCKEIYDELERSIAVNSEFENYTWSIIRPQTTLAMTRYFECNAKVLVAFSLMNECFQTITDRHTGINVVQNVLYSCRSPDLTRVNFGRFHIFILEKDDAIECAASIRIHGREVAEMPFIATEGTCRRQGICRNLMIVIESFLCALKVQKLVIQSVPDTSDMWKHKFGFKELAGKFEKELASYNILTLPHASKLYKDLGGNPN. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00509 354 ProSiteProfiles Zinc finger PHD-type profile. 60 105 IPR019787 -
Seca10g00509 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 114 IPR013083 -
Seca10g00509 354 SUPERFAMILY FYVE/PHD zinc finger 58 108 IPR011011 -
Seca10g00509 354 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 199 340 IPR000182 GO:0016747
Seca10g00509 354 PANTHER PHD FINGER PROTEIN 12 1 349 IPR042163 GO:0003714|GO:0045892
Seca10g00509 354 SMART PHD_3 104 155 IPR001965 -
Seca10g00509 354 SMART PHD_3 62 103 IPR001965 -
Seca10g00509 354 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 227 324 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00509 Seca-Chr10 4508783 4510750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00509 1 349 PHD Transcription Factor Family AT4G14920 36.842 4.43e-75 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00509 - - pvu:PHAVU_009G190800g 365.54