Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00506 ATGGCTTTCCCAATCTTGTACATCTTTTCTCTTCTCTTTCTTTATGTTGTGTTAGTTTTTGGAAACGTTAATCTGAGTTCTACACTCTCCACCAATGACAACGTTGGATGGCTTTCACCTTCTGGTGAATTTACTTTTGGATTTCGCCAACTTAATGGCACAAACTTGTTCATGGTGGCCATATGGTATAACAAAATACCTGAAAAGACCATTGTTTGGAATGCAAATGCAGAGAATCCAGCACCAACGGGATCACAAATTCAGCTCACATCACAAGGGCTCATGCTGACAAGTCCTGAAGGAGAATCCATTTGGTCAACACAACCAAAAGCTGTTGTTTCCTATGGAGCTATGCTTGACACTGGAAACTTTGTTCTTGTAAACAAGAGTTCTACTTTTGTGTGGGAAAGTTTCAAGAATCCCACTGACACGTTGTTGCCTAACCAATCTCTGCAGCTAGATGGCAACCTAACATCTCAAATCACAAAGACCAATTACACAAGTGGAAGGTTCCAACTTTATTTTCAGAATGGTATTGCCATGCTAAGCCCCCTTGCATGGCCTACTCAATTACGGTACAAATCTTATTATAGTATTGATGCTCCTGATTCTGTTTCACAATTAGTGTTTGATGAATTAGGGAATATTTATGTACAAACACCAAATGGGACTAGAATCCAACCTCAGGGTCCAAAATGGGGTAACTTAGTTCTTGATCCTAAGGTGTATTACTACAGAGCAACACTTGACTACTATGGAGTTTTCACTCAATATGCTCATCCAAGGGACACTAAGGCCCAACAAGGATGGACAATTGTGCGTTATGTTCCTGATAATATTTGCATTGCAATATTCAATGACATGGGTAGTGGTTCATGTGGCTATAATAGTTACTGCTCCATGGAAAATCAGATTCCAACTTGCAAATGCCCTGATGGGTATTCATTGGTAGATCCAGGTAATGAATTTGGTGGATGCCAACCCAATTTCACCTTCGGTTGTGGAGCTGATAATGATGAAAGATTGCAAGCACGGGCAGAAGATCTATATAAATTAACTACTCTTAGATATGTGGATTGGCCTTTATCAGATTATGAAAAGATGCAACCTTACTCTCAACAGGACTGCCAACAATCTTGCTTGCATGATTGCATGTGTGCTGTTGCCATTTTCAACAATGAAACTTGTTGGAAGAAAAGATTACCTCTTGCTAATGGAAGAGCACAGAGTGGAAGCCAACTGGCTCTTATTAAAACAAGAGTTGCACCTCTAGGTAACAATATTGGTCCTTCCACTTCTCCTGATTCAAAGAAAGAAGATAGAGTTAAGCCAATTCTTCAAGGTTTACTTATTGGCTCCACTGTTATTAATAGTATACTTCTAGCTACTGTTGTTTTGGTTCTTCTCTTAAGGCCCAAAAGAATTGTCCAAGCTGCAAGTCTTTTGGAAACAAATTTACACTCATTTACTTATGAAGCATTGAAAGAGGCCACATGGGGCTTTAGTGAAGAATTAGGCAGGGGTTCATTTGGCATTGTTTACAAAGGCAAGCTAGAAGCAACATTTTATAATTTTGTTGCTGTCAAGAGATTGGACAGATTAGCACAAGAAAGAGAGAAGGAATTTAAGACTGAGTTGAGTGCTATTGGTAAGACCTGCCACAAAAATCTTGTAAGGTTGATTGGATTTTGTGATGAGGGAATCCATAGACTACTGGTCTACGAGTTCATGAGCAATGGTACTCTTGCAGATGTCTTATGTGGACAACCCAAATCCATTTGGAAACTGAGGGTTGGATTTACTTTGGGGATTGCAAGAGGGTTGGTGTACTTACATGAAGAGTGTGACACTCCCATCATTCATTGTGATATAAAACCTCAAAATATACTCATAGATGACCATTTCACAGCAAAGATCTCTGATTTTGGGTTGGCCAAGTTGTTGTTATCTGACCAGAGTAGAACCAATACTATGATCCGAGGAACTCGAGGATATGTGGCTCCTGAATGGTTCAAGAATGTTCCTGTGACTGTTAAAGTGGATGTTTATAGCTTTGGTGTCATGTTATTGGAAATCATTTGTTGCAGAAAAAGTGTGTTACCAATGGATTCAGGGAAGGAAGAAAAGGCAATATTAACAGATTGGGCCTATGATTGCTATATGGAAGGGAGAATAGATGCTCTAGTGGAGAACGATGAGGAGGCTTTAAGTGACTATGGCAGGTTGCAACAGTGGATAAAGATAGCAATTTGGTGCATTCAGGAGCACCACGAGACGAGGCCAACAATGAGAATGGTCGTGCTAATGCTAGAAGGTTTGGTTGAAGTTCCTAACCCACCATCCCCTTTTTCCATCAATTCATTTTCTTAA 2370 0.3983 MAFPILYIFSLLFLYVVLVFGNVNLSSTLSTNDNVGWLSPSGEFTFGFRQLNGTNLFMVAIWYNKIPEKTIVWNANAENPAPTGSQIQLTSQGLMLTSPEGESIWSTQPKAVVSYGAMLDTGNFVLVNKSSTFVWESFKNPTDTLLPNQSLQLDGNLTSQITKTNYTSGRFQLYFQNGIAMLSPLAWPTQLRYKSYYSIDAPDSVSQLVFDELGNIYVQTPNGTRIQPQGPKWGNLVLDPKVYYYRATLDYYGVFTQYAHPRDTKAQQGWTIVRYVPDNICIAIFNDMGSGSCGYNSYCSMENQIPTCKCPDGYSLVDPGNEFGGCQPNFTFGCGADNDERLQARAEDLYKLTTLRYVDWPLSDYEKMQPYSQQDCQQSCLHDCMCAVAIFNNETCWKKRLPLANGRAQSGSQLALIKTRVAPLGNNIGPSTSPDSKKEDRVKPILQGLLIGSTVINSILLATVVLVLLLRPKRIVQAASLLETNLHSFTYEALKEATWGFSEELGRGSFGIVYKGKLEATFYNFVAVKRLDRLAQEREKEFKTELSAIGKTCHKNLVRLIGFCDEGIHRLLVYEFMSNGTLADVLCGQPKSIWKLRVGFTLGIARGLVYLHEECDTPIIHCDIKPQNILIDDHFTAKISDFGLAKLLLSDQSRTNTMIRGTRGYVAPEWFKNVPVTVKVDVYSFGVMLLEIICCRKSVLPMDSGKEEKAILTDWAYDCYMEGRIDALVENDEEALSDYGRLQQWIKIAIWCIQEHHETRPTMRMVVLMLEGLVEVPNPPSPFSINSFS. 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00506 789 PIRSF SRK 1 789 IPR024171 GO:0004674
Seca10g00506 789 Pfam D-mannose binding lectin 70 156 IPR001480 -
Seca10g00506 789 Gene3D Transferase(Phosphotransferase) domain 1 577 775 - -
Seca10g00506 789 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 32 782 - -
Seca10g00506 789 ProSiteProfiles Bulb-type lectin domain profile. 20 139 IPR001480 -
Seca10g00506 789 ProSitePatterns Protein kinases ATP-binding region signature. 505 529 IPR017441 GO:0005524
Seca10g00506 789 Pfam Protein kinase domain 502 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00506 789 SUPERFAMILY Protein kinase-like (PK-like) 484 771 IPR011009 -
Seca10g00506 789 ProSiteProfiles Protein kinase domain profile. 499 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00506 789 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Seca10g00506 789 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 577 778 - -
Seca10g00506 789 SMART serkin_6 499 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00506 789 CDD B_lectin 38 141 IPR001480 -
Seca10g00506 789 Gene3D Phosphorylase Kinase; domain 1 467 576 - -
Seca10g00506 789 SMART blect_4 28 141 IPR001480 -
Seca10g00506 789 Gene3D - 21 140 IPR036426 -
Seca10g00506 789 FunFam S-receptor-like serine/threonine-protein kinase 471 576 - -
Seca10g00506 789 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 19 139 - -
Seca10g00506 789 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 178 IPR036426 -
Seca10g00506 789 FunFam Serine/threonine-protein kinase 142 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00506 Seca-Chr10 4456559 4458928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00506 434 781 Receptor kinase-like Gene Family AT1G56120 40.782 1.65e-64 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca10g00506 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00506 - - lja:Lj2g3v1989170.1 1162.13