Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00504 ATGGCGAACCCTGTTGAAGTTTCTGCACTCAATCGCATAAAATTGCATCTTCTAGGCGAACTCTCTCCCCTCCCACAACGCACTTCCTCCACTGAACATACCCAAAATAATCTCTGGTTTCAATTCGATGAATCAAACACAGCCTCCTCTCAATCTGACTCCCTCTGTTCCCAATCTTCGAGTTCTGATTCTTCTTCATACTTAACTGAACTCCTCGATCTCCCAACCGATTCCATGCCTTTTGAATTTGAGTTCAAACCCCAAATAATTGACCTCGAAGCCGAAACGTCGTCGTTTGACTTCAGTTTCTCAAACGCGCAAGCGAAATCAGATCCTGGATCTCAAGCCGTTGAGAAGAAACAAACTCAATCGAATCGGAAGCCTTCGTTGCAAATCTCTCTCCCCAAGAAGACCGAGTGGATCCATTTCGGAGAGGCGGAGGTTCAAGAAATGGCGGCGCAGCCTGAGGAGAAGAAGCACTACAGAGGGGTCCGACAGAGGCCATGGGGCAAGTTCGCTGCGGAGATCCGAGACCCGAACAAGCGTGGATCTAGGGTGTGGTTGGGAACATTCGACACAGCTATCGAAGCTGCTAAAGCCTATGACCGAGCAGCGTTTAAGCTTCGGGGTTCTAAGGCCATTCTCAACTTCCCCCTCGAAGCTGGTGCCGATGAGCGGAAGCACCGCCGAGAAGAGGCGGTGGTGGAGAAAGTTGTGAAGAGGATAAAGACGGCGGAAACGGACATTAGCCGTGTAAGGGATACTCCGTTAACGCCGTCTAGCTGGAAAGGGTTCTGGGACGCTGATGTAAAGGGTATTTTCACGGTCCCGCCCTTGTCACCGTTATCTCCCCATCCAGCGTTGGGTTATCAACAGCTTATGGTTGTCTGA 891 0.5051 MANPVEVSALNRIKLHLLGELSPLPQRTSSTEHTQNNLWFQFDESNTASSQSDSLCSQSSSSDSSSYLTELLDLPTDSMPFEFEFKPQIIDLEAETSSFDFSFSNAQAKSDPGSQAVEKKQTQSNRKPSLQISLPKKTEWIHFGEAEVQEMAAQPEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEAGADERKHRREEAVVEKVVKRIKTAETDISRVRDTPLTPSSWKGFWDADVKGIFTVPPLSPLSPHPALGYQQLMVV. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00504 296 SMART rav1_2 160 224 IPR001471 GO:0003700|GO:0006355
Seca10g00504 296 Pfam AP2 domain 160 210 IPR001471 GO:0003700|GO:0006355
Seca10g00504 296 CDD AP2 159 218 IPR001471 GO:0003700|GO:0006355
Seca10g00504 296 SUPERFAMILY DNA-binding domain 160 219 IPR016177 GO:0003677
Seca10g00504 296 FunFam Ethylene-responsive transcription factor 2 159 220 - -
Seca10g00504 296 Gene3D AP2/ERF domain 159 220 IPR036955 GO:0003700|GO:0006355
Seca10g00504 296 PANTHER DNA-BINDING DOMAIN 109 229 IPR044808 GO:0003700|GO:0009873
Seca10g00504 296 PRINTS Ethylene responsive element binding protein signature 200 220 IPR001471 GO:0003700|GO:0006355
Seca10g00504 296 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Seca10g00504 296 ProSiteProfiles AP2/ERF domain profile. 160 218 IPR001471 GO:0003700|GO:0006355
Seca10g00504 296 MobiDBLite consensus disorder prediction 104 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00504 Seca-Chr10 4421638 4422528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00504 1 296 AP2-EREBP Transcription Factor Family AT5G47230 47.152 2.51e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca10g00504 AP2 3.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00504 K09286 - gmx:100808173 316.62