Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00496 ATGACGGTTGAAAAGGAAGATTTGGGTTTGAGTCTTAGCTTGAGCTTCCCTCAAAATCCCCCAAATCCCCTGCATCTCAATCTCATGTCCTCTTCTCCTTCTGGGCACAAACCTTCTTGGAACGAGCCTTTCACTTCTTCAGATCGAGATTCAGAAACATGCAGAGGAGGCGAAGGTCGATCATTACTTGGCGGAATCGATGTGAACCGGCTACCTGCAGGGGTTGAGTGTGAAGAGGAGGCAGGAGTTTCATCTCCGAACAGCACGGTTTCAAGCGTGAGTGGTAAACGAAGCGAGAGAGAAGCGAATGGTGAAGAGCGTGACTTGGAGAGAGATTGTTCCAGAGGGATCAGTGATGAAGAAGACGGTGAAACCTCAAGGAAAAAACTTAGGCTCACCAAAGACCAATCCATTATTCTAGAAGAGAGCTTCAAAGAGCACAATACTCTTAACCCCAAACAAAAGATGGCACTGGCAAAGCAGTTAGGCCTTCGAGCACGACAAGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACGAAGCTGAAGCAAACAGAGGTGGACTGTGAGTTTTTGAAAAGGTGCTGTGAGAATCTGACGGAGGAAAACAGGAGGTTGCAGAAGGAAGTTCAGGAGCTTAGAGCACTGAAACTTTCCCCGCAATTCTACATGCACATGACCCCACCCACAACCCTCACCATGTGCCCTTCTTGTGAGCGTGTCGCTGTCCCACCATCTGCCGTTGATGCTGCCACGCGTCACCATCACATGCCCCCGACTCACCATCGCAGTTTCCCTATTGGGCCCTGGCCCACCGCTGCTTCTATTCCACACAGGCCCTTCGATACCCTCCGTCCCAGATCTTGA 867 0.5063 MTVEKEDLGLSLSLSFPQNPPNPLHLNLMSSSPSGHKPSWNEPFTSSDRDSETCRGGEGRSLLGGIDVNRLPAGVECEEEAGVSSPNSTVSSVSGKRSEREANGEERDLERDCSRGISDEEDGETSRKKLRLTKDQSIILEESFKEHNTLNPKQKMALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSAVDAATRHHHMPPTHHRSFPIGPWPTAASIPHRPFDTLRPRS. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00496 288 Coils Coil 182 219 - -
Seca10g00496 288 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Seca10g00496 288 MobiDBLite consensus disorder prediction 1 128 - -
Seca10g00496 288 PRINTS Lambda-repressor HTH signature 154 163 IPR000047 GO:0003677
Seca10g00496 288 PRINTS Lambda-repressor HTH signature 163 179 IPR000047 GO:0003677
Seca10g00496 288 MobiDBLite consensus disorder prediction 12 47 - -
Seca10g00496 288 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Seca10g00496 288 Gene3D - 131 181 - -
Seca10g00496 288 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Seca10g00496 288 SUPERFAMILY Homeodomain-like 119 184 IPR009057 -
Seca10g00496 288 Pfam HD-ZIP protein N terminus 3 101 IPR006712 GO:0005634
Seca10g00496 288 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Seca10g00496 288 Pfam Homeobox associated leucine zipper 183 217 IPR003106 GO:0006355|GO:0043565
Seca10g00496 288 MobiDBLite consensus disorder prediction 252 288 - -
Seca10g00496 288 SMART HOX_1 125 187 IPR001356 GO:0003677
Seca10g00496 288 MobiDBLite consensus disorder prediction 82 97 - -
Seca10g00496 288 CDD bZIP 176 215 - -
Seca10g00496 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 254 - -
Seca10g00496 288 MobiDBLite consensus disorder prediction 98 128 - -
Seca10g00496 288 FunFam Homeobox-leucine zipper protein 18 113 188 - -
Seca10g00496 288 CDD homeodomain 127 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00496 Seca-Chr10 4373279 4374797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00496 1 288 Homeobox Transcription Factor Family AT4G16780 63.787 8.18e-114 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca10g00496 HD-ZIP_N 3.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00496 K09338 - gmx:100783851 447.973