Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00493 ATGACCCGGCGTTGCTCGCATTGCAGCCACAATGGCCACAACTCTAGGACTTGTCCCAACCGTGGAGTCAAGCTCTTCGGGGTCCGCTTGACCGATGGGTCGATCCGGAAGAGTGCCAGCATGGGTAATCTCACCCACTATGTCGGGTCCCATCAACCCGCTTCCAACAATTCGGGTTCTCCCGCTGACACCCCCGACCACGCTGCCCCCGACGGTTACGCCTCCGAGGACTTTGTTCCTGGCTCTTCTTCAACCTCCCGTGAACGAAAGAAGGGTGTCCCGTGGACTGAGGATGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTTGGCAAAGGTGATTGGCGTGGAATTGCGCGAAATTATGTTGTATCAAGGACACCTACTCAAGTGGCCAGTCATGCTCAAAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGGAAAAGACGTTCCAGTTTGTTTGATATTGCTGTAGATGAAGTTTGTACCCTTACTTGTAAATACTATGCATCAGCTGACACGGCCATGGAACAGCAGGACTTGTTGCCATCTAATCAACTACAGGCTGAAACAGAAGGCAATAACCCATTGCCTACTCCTCCAGTCCTTGATGAAGAGTGTGAATCCATGGATTCCACAAACTCAAATGATGGGGAGTCTGCCTCATTAAAGCCAGATAGCTCACAATCATCATACCCAACATACTGTTATTCTCCTTTCTGTCCATTTCCTATGCCTTATTGGTCAGCAGGATACAGTCCAGAGCCTACTAAAAGGGAGGCACATGAAGTGCTGAAGCCAACTGCAGTACATTCTAAAAGCCCAATCAATGTTGATGAACTGGTTGGCATGTCAAAACTGAGTTTAGGGGACTCTATTGGTGATTCTGGTCCCTCCTCTCTGTCCCTAAAACTCCTTGAAGGACCTTCTAGACAGTCAGCTTTTCATGCAACTCCAGCATGCAGTGATTCAAACATGAATGGCAGTGCAGTCCATGCAGTTTAA 1008 0.4812 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYVGSHQPASNNSGSPADTPDHAAPDGYASEDFVPGSSSTSRERKKGVPWTEDEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIAVDEVCTLTCKYYASADTAMEQQDLLPSNQLQAETEGNNPLPTPPVLDEECESMDSTNSNDGESASLKPDSSQSSYPTYCYSPFCPFPMPYWSAGYSPEPTKREAHEVLKPTAVHSKSPINVDELVGMSKLSLGDSIGDSGPSSLSLKLLEGPSRQSAFHATPACSDSNMNGSAVHAV. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00493 335 MobiDBLite consensus disorder prediction 190 231 - -
Seca10g00493 335 FunFam transcription factor MYB1R1 93 144 - -
Seca10g00493 335 ProSiteProfiles SANT domain profile. 95 143 IPR017884 -
Seca10g00493 335 MobiDBLite consensus disorder prediction 45 63 - -
Seca10g00493 335 CDD SANT 94 139 IPR001005 -
Seca10g00493 335 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Seca10g00493 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Seca10g00493 335 SMART sant 91 141 IPR001005 -
Seca10g00493 335 MobiDBLite consensus disorder prediction 214 231 - -
Seca10g00493 335 MobiDBLite consensus disorder prediction 1 21 - -
Seca10g00493 335 PANTHER TRANSCRIPTION FACTOR KUA1 3 274 - -
Seca10g00493 335 Gene3D - 93 145 - -
Seca10g00493 335 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Seca10g00493 335 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 142 IPR006447 GO:0003677
Seca10g00493 335 SUPERFAMILY Homeodomain-like 89 144 IPR009057 -
Seca10g00493 335 MobiDBLite consensus disorder prediction 45 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00493 Seca-Chr10 4340338 4342565 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca10g00493 Myb_DNA-binding 3.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00493 - - ccaj:109807943 542.347