Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00491 ATGGAAGAAGAAGAAGTAGGTTTGGAGGATAAGAAGAAGTACCGCGGAGTACGCATGCGTCAGTGGGGGAAATGGGTATCAGAAATCAGAGAGCCAAAGAAGAAGTCCAGAATATGGCTTGGCACTTTTTCTACGGCTGAGATGGCAGCTCGAGCCCATGATGTTGCTGCTCTCGCAATCAAAGGCAACTCTGCTTTCCTTAATTTCCCTGAATTAGCCTCACAGCTTCCCCAACCAGCCACCACTTCCCCTAAAGACATCCAAGTCGCCGCCGCCAAGGCCGCTACCATGAATTACCACCACCAAGCCCAAGACAGCTGCTGTGAAGCCCAGGCCCAAGCCCAGCTGAGCCCACCCTTATCGTCCTCCCACTCCCAACACTCATCCAATTCATCGTTAACCGGAGAGGATGACACATTCTTTGACCTCCCAGATCTCTCACTCGAATCAAATTACAGTGCAGGTGAATTTCTTCACTCCACACCGTGGCTCGTAGCTGGAGCTGAATATCAAGACTCAATTTTTCGGCTGGAAGAGCCTTCCCCCTGGGCGCCTTGCTAA 561 0.5152 MEEEEVGLEDKKKYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGNSAFLNFPELASQLPQPATTSPKDIQVAAAKAATMNYHHQAQDSCCEAQAQAQLSPPLSSSHSQHSSNSSLTGEDDTFFDLPDLSLESNYSAGEFLHSTPWLVAGAEYQDSIFRLEEPSPWAPC. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00491 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 150 - -
Seca10g00491 186 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Seca10g00491 186 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Seca10g00491 186 FunFam Ethylene-responsive transcription factor 2 12 71 - -
Seca10g00491 186 CDD AP2 12 72 IPR001471 GO:0003700|GO:0006355
Seca10g00491 186 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Seca10g00491 186 MobiDBLite consensus disorder prediction 110 136 - -
Seca10g00491 186 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Seca10g00491 186 Gene3D AP2/ERF domain 12 71 IPR036955 GO:0003700|GO:0006355
Seca10g00491 186 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Seca10g00491 186 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00491 Seca-Chr10 4318756 4319316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00491 13 163 AP2-EREBP Transcription Factor Family AT2G35700 60.927 5.50e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca10g00491 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00491 - - gmx:100812293 218.779