Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00489 ATGGCACCCAAGATTCATGAACCAAGTAAGAAAACAATGAACAGAGGAGCATGGACCCCAGAGGAAGATCAGAAACTAATCCAGTGCATTGAAATTCACGGTGCAAAGAGGTGGAAAATTGTTGCAGCTAACTCAGGTCTAAACAGGTGTGGAAAGAGTTGCAGGTTGAGATGGTTAAATTACTTGAGGCCCAATATCAAGAGGGGCAACATATCACCTGAAGAAGAGGATTTGATTATTAGGCTTCACAGACTGCTGGGAAACAGGTGGTCTTTGATAGCAAAGAGGCTTCCAGGAAGAACAGACAATGAAATTAAAAACTATTGGAATTCTTGTTTGTGCAAAAAAGTTAATCACAAAGAGTTTAAACCAGAAACTTCAATGGCTCAAGAAACACACATGACTCAGAATAATGAGGAAAGAGCAGAGTTAGAGATTGAGAATGAGGATCAGGCCATTGATGGAAGTGGAGACTCAGAAGTTAACTTTGATATGAATGAATTCTTCGATTTCTCCACTGAAAGACCCTATGCGCTGGATTGGGTGAACAATTATCTACAACTTGATGAAATCGATCCATATAGCAACTATAATGAAGTGAGTGAGTGGCGCATTTTATGA 621 0.3977 MAPKIHEPSKKTMNRGAWTPEEDQKLIQCIEIHGAKRWKIVAANSGLNRCGKSCRLRWLNYLRPNIKRGNISPEEEDLIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNSCLCKKVNHKEFKPETSMAQETHMTQNNEERAELEIENEDQAIDGSGDSEVNFDMNEFFDFSTERPYALDWVNNYLQLDEIDPYSNYNEVSEWRIL. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00489 206 SMART sant 14 64 IPR001005 -
Seca10g00489 206 SMART sant 67 115 IPR001005 -
Seca10g00489 206 Gene3D - 72 145 - -
Seca10g00489 206 CDD SANT 72 110 IPR001005 -
Seca10g00489 206 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Seca10g00489 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Seca10g00489 206 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Seca10g00489 206 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Seca10g00489 206 FunFam Transcription factor TT2 71 142 - -
Seca10g00489 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Seca10g00489 206 PANTHER MYB DOMAIN PROTEIN 55 8 151 - -
Seca10g00489 206 FunFam MYB-related transcription factor 14 67 - -
Seca10g00489 206 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca10g00489 206 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Seca10g00489 206 Gene3D - 7 68 - -
Seca10g00489 206 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00489 Seca-Chr10 4298836 4300657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00489 9 202 MYB Transcription Factor Family AT3G13540 41.706 4.19e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g00489 Myb_DNA-binding 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00489 K09422 - gmx:100791381 297.36