Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca10g00489 | ATGGCACCCAAGATTCATGAACCAAGTAAGAAAACAATGAACAGAGGAGCATGGACCCCAGAGGAAGATCAGAAACTAATCCAGTGCATTGAAATTCACGGTGCAAAGAGGTGGAAAATTGTTGCAGCTAACTCAGGTCTAAACAGGTGTGGAAAGAGTTGCAGGTTGAGATGGTTAAATTACTTGAGGCCCAATATCAAGAGGGGCAACATATCACCTGAAGAAGAGGATTTGATTATTAGGCTTCACAGACTGCTGGGAAACAGGTGGTCTTTGATAGCAAAGAGGCTTCCAGGAAGAACAGACAATGAAATTAAAAACTATTGGAATTCTTGTTTGTGCAAAAAAGTTAATCACAAAGAGTTTAAACCAGAAACTTCAATGGCTCAAGAAACACACATGACTCAGAATAATGAGGAAAGAGCAGAGTTAGAGATTGAGAATGAGGATCAGGCCATTGATGGAAGTGGAGACTCAGAAGTTAACTTTGATATGAATGAATTCTTCGATTTCTCCACTGAAAGACCCTATGCGCTGGATTGGGTGAACAATTATCTACAACTTGATGAAATCGATCCATATAGCAACTATAATGAAGTGAGTGAGTGGCGCATTTTATGA | 621 | 0.3977 | MAPKIHEPSKKTMNRGAWTPEEDQKLIQCIEIHGAKRWKIVAANSGLNRCGKSCRLRWLNYLRPNIKRGNISPEEEDLIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNSCLCKKVNHKEFKPETSMAQETHMTQNNEERAELEIENEDQAIDGSGDSEVNFDMNEFFDFSTERPYALDWVNNYLQLDEIDPYSNYNEVSEWRIL. | 207 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca10g00489 | 206 | SMART | sant | 14 | 64 | IPR001005 | - | |
Seca10g00489 | 206 | SMART | sant | 67 | 115 | IPR001005 | - | |
Seca10g00489 | 206 | Gene3D | - | 72 | 145 | - | - | |
Seca10g00489 | 206 | CDD | SANT | 72 | 110 | IPR001005 | - | |
Seca10g00489 | 206 | ProSiteProfiles | Myb-like domain profile. | 10 | 62 | IPR001005 | - | |
Seca10g00489 | 206 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 10 | 66 | IPR017930 | - | |
Seca10g00489 | 206 | Pfam | Myb-like DNA-binding domain | 15 | 62 | IPR001005 | - | |
Seca10g00489 | 206 | Pfam | Myb-like DNA-binding domain | 68 | 112 | IPR001005 | - | |
Seca10g00489 | 206 | FunFam | Transcription factor TT2 | 71 | 142 | - | - | |
Seca10g00489 | 206 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 67 | 117 | IPR017930 | - | |
Seca10g00489 | 206 | PANTHER | MYB DOMAIN PROTEIN 55 | 8 | 151 | - | - | |
Seca10g00489 | 206 | FunFam | MYB-related transcription factor | 14 | 67 | - | - | |
Seca10g00489 | 206 | ProSiteProfiles | Myb-like domain profile. | 63 | 113 | IPR001005 | - | |
Seca10g00489 | 206 | SUPERFAMILY | Homeodomain-like | 13 | 109 | IPR009057 | - | |
Seca10g00489 | 206 | Gene3D | - | 7 | 68 | - | - | |
Seca10g00489 | 206 | CDD | SANT | 17 | 62 | IPR001005 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca10g00489 | Seca-Chr10 | 4298836 | 4300657 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca10g00489 | 9 | 202 | MYB Transcription Factor Family | AT3G13540 | 41.706 | 4.19e-50 | 161 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Seca10g00489 | Myb_DNA-binding | 1.1e-17 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca10g00489 | K09422 | - | gmx:100791381 | 297.36 |