Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00488 ATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTTATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATCGTCAGCAACCATCCATTGTTCGTCTCACAAGGCCGACTCGCCCTGACAAGGCTCGTCGACTAGGCTATAAGGCTAAGCAGGGATATGTGGTTTATCGCGTTCGTGTTCGTAGGGGTGGTCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACGAATCAGGGTGTTACTCAACTGAAATTCCAGCGGAGCAAGAGGTCAGTTGCTGAGGAGCGAGCTGGACGGAAGCTAGGTGGACTCAGGGTCCTCAATTCTTACTGGGTGAATGAGGATTCAACTTATAAATACTTCGAGATAATTCTGGTGGATGTTGCTCACACTGCTATTAGAAATGATCCAAGGATCAATTGGCTCTGCAATCCAGTGCACAAGCACAGGGAGCTGCGTGGGCTCACCTCTGCTGGGAAAAGTAATAGGGGTTTACGGGGCAGAGGACATCTGTACCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCCCTTCGCCGTTACCGCTGA 615 0.5122 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHTAIRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00488 204 FunFam Ribosomal protein L15 1 204 - -
Seca10g00488 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Seca10g00488 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Seca10g00488 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Seca10g00488 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Seca10g00488 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Seca10g00488 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00488 Seca-Chr10 4290152 4292776 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00488 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 91.667 2.60e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00488 K02877 - gmx:100810310 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00490 10 4302578 4305022 Seca10g00488 10 4290152 4292776 PCT