Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00480 ATGGTGAAGATAGCTCTCGGTGCCTTTGATGACTCTTTTAGCGCTGCCTCCCTCAAGGCTTATATAGCAGAGTTCATTGCCACTCTGCTTTTCGTGTTTGCTGGCGTTGGATCAGCCATCGCTTACAATGAGCTGACAAAAGATGCAGCCTTGGATCCTACGGGTCTGGTAGCAGTGGCTTTGGCCCATGGGCTTGCACTATTCGTAGGCGTGTCCATTGCAGCCAACATCTCAGGTGGGCATTTGAACCCAGCTGTCACATTTGGATTGGCTATTGGAGGCAACATCACCCTCCTAACCGGTTTCTTATACTGGATTGCCCAATTGCTCGGTTCCATCGTTGCATGTCTCCTCCTCAGTTTTGTCACCGCTAAGCAGAGCATTCCAACCCACGGACTGGATGCTGGGGTGAACGTTTTTGCAGGTGTAGTGTTCGAGATTATTGTTACCTTTGGATTGGTTTACACTGTTTATGCGACTGCAGCTGACCCCAAAAAGGGATCTTTGGGTACCATTGCACCCATTGCTATTGGGTTCATTGTGGGTGCCAACATCTTAGCTGCTGGTCCATTCAGTGGCGGTTCAATGAACCCGGCTCGCTCATTCGGTCCAGCTGTGGTTAGTGGAAACTTTGCTGATAACTGGATCTACTGGGTTGGTCCATTGATTGGAGGAGGCTTGGCTGGCTTGATATATGGGGACATCTTCATTGGTTCATATGCCCCTGCCCCTGCCCCAGCCACTGAAACCTACCCTTGA 759 0.5033 MVKIALGAFDDSFSAASLKAYIAEFIATLLFVFAGVGSAIAYNELTKDAALDPTGLVAVALAHGLALFVGVSIAANISGGHLNPAVTFGLAIGGNITLLTGFLYWIAQLLGSIVACLLLSFVTAKQSIPTHGLDAGVNVFAGVVFEIIVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFADNWIYWVGPLIGGGLAGLIYGDIFIGSYAPAPAPATETYP. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00480 252 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g00480 252 SUPERFAMILY Aquaporin-like 16 237 IPR023271 -
Seca10g00480 252 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Seca10g00480 252 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g00480 252 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g00480 252 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g00480 252 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g00480 252 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g00480 252 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g00480 252 FunFam Probable aquaporin TIP1-1 2 249 - -
Seca10g00480 252 PANTHER AQUAPORIN-8 4 238 IPR034294 -
Seca10g00480 252 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g00480 252 Gene3D Glycerol uptake facilitator protein. 2 241 IPR023271 -
Seca10g00480 252 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00480 Seca-Chr10 4254861 4257269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00480 1 240 Major Intrinsic Protein MIP AT5G47450 80.417 1.34e-135 380