Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00472 ATGGAGAGGCACAAATGCAAGCTTTGCTTCAGGACATTCGCCAATGGCAGAGCACTCGGTGGCCACATGAAGTCTCACTTAGCCACTCTTCCTCTTCCTCCAAAGCCTCAACCACTCCCTCATCATAACACTTCCTTCTCCTATTCTTCTTCTTCAGAAGAAGAAGAAGAGAATCACAGTCACAGAGATTCAGATGAAAAGGCTCTGATTTATGGTTTGAGAGAGAACCCAAAGAAAAGTTTCAGACTTGCGGATCCTGAGTTTTCTTTCCCAGCTGATACTGGCTCTGTTGTCCAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGGAGACGATCCAAGCGAAACCGAAAACCCAGCAATTTGGATCCCAAGAAGCTTAAACTGAGTTTCATGGTATCGCCAGAACCTGTGAGTTCTGTTTCTGATACTTCCCCTGAAGAAGATGTCGCCATGTGCCTCATGATGCTCTCAAGGGACAAATGGAAGAGGAATGATGTTAATGTTGTTGTTGAAGAAGAACAAGTTGAGAGATCAGAGGAAAAGTCAAAGGGATTAATCCAAGAGATCAAGTTGAAGAAAGTGTTGTCGCCGGATGACCCTAAAGTTCGCGGGAAGCATGAGTGTCACAACTGTGGGAAAACGTTTCGATCTTCACGAGCATTAGGGAGTCACAAAAGCATATGTCTCCGTGATGAAGCAGAGGCTGCAAATGATAATAGAATCTTTGAATGTCCATTTTGTTTCAAAGTGTTTGGGTCTGGTCAAGCACTTGGTGGCCACAAGAGATCTCATCTCCACCATCCATCTTCATCTTCAACTGCTATTGATTCTTCTACTAGATTGAAAGAGAGCTTCATCGATCTCAACTTGCCAGCTACAGCAGAAGAAGATGATCTTAGTGTCCTTTCTGATGCCTAA 927 0.4444 MERHKCKLCFRTFANGRALGGHMKSHLATLPLPPKPQPLPHHNTSFSYSSSSEEEEENHSHRDSDEKALIYGLRENPKKSFRLADPEFSFPADTGSVVQDRESETESKNPTRRRSKRNRKPSNLDPKKLKLSFMVSPEPVSSVSDTSPEEDVAMCLMMLSRDKWKRNDVNVVVEEEQVERSEEKSKGLIQEIKLKKVLSPDDPKVRGKHECHNCGKTFRSSRALGSHKSICLRDEAEAANDNRIFECPFCFKVFGSGQALGGHKRSHLHHPSSSSTAIDSSTRLKESFIDLNLPATAEEDDLSVLSDA. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00472 308 ProSitePatterns Zinc finger C2H2 type domain signature. 247 269 IPR013087 -
Seca10g00472 308 MobiDBLite consensus disorder prediction 52 67 - -
Seca10g00472 308 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Seca10g00472 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Seca10g00472 308 SUPERFAMILY beta-beta-alpha zinc fingers 209 267 IPR036236 -
Seca10g00472 308 Coils Coil 171 191 - -
Seca10g00472 308 SMART c2h2final6 245 267 IPR013087 -
Seca10g00472 308 SMART c2h2final6 4 26 IPR013087 -
Seca10g00472 308 SMART c2h2final6 209 229 IPR013087 -
Seca10g00472 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 236 IPR013087 -
Seca10g00472 308 MobiDBLite consensus disorder prediction 26 67 - -
Seca10g00472 308 Pfam C2H2-type zinc finger 209 228 - -
Seca10g00472 308 Pfam C2H2-type zinc finger 245 267 - -
Seca10g00472 308 Pfam C2H2-type zinc finger 3 28 - -
Seca10g00472 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 245 272 IPR013087 -
Seca10g00472 308 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 307 IPR044303 GO:0006355
Seca10g00472 308 Gene3D Classic Zinc Finger 206 267 - -
Seca10g00472 308 MobiDBLite consensus disorder prediction 82 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00472 Seca-Chr10 4163280 4168735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00472 1 305 C2H2 Transcription Factor Family AT3G60580 38.095 3.77e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g00472 zf-C2H2_6 9.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00472 - - gmx:100815124 357.066