Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00470 ATGGCAACTCTCTTCCTTAATTCGCTGCATTTGGTTTTGGTTTTGAGTTGCATATTCTATATAGCAACAGTGACATGCACACCTTACCACTACGACGACAGTAACACATTGTCATCGAAGCAGAAGCAGAACCATAGTTGGATCGGACCTATCGGTCACCGTGTAATAACCGTCAACATTAACGGCGGTGGCCACTTCCGTTCCGTCCAAGAAGCCGTGAATGCAGTCCCAGACAACAACAGAATGAACGTCCTCATTCAAATCAGCGCCGGTTACTACATAGAGAAAGTGGTGGTGCCCGTGACGAAGCCGTACATAACGTTTGAGGGAGAGGGTAGGGGTGTGACGGTGATAGAATGGCATGATCGAGCCAGTGACCCTGGTCCCAACGGTCAGCAACTGCGTACTTACAGAACTGCTTCTGTTACTGTTTTTGCCAGCTATTTTTCTGCTAGGAATATCAGCTTTAAGAACACAGCGCCTGCACCAATGCCAGGGATGCAAGGATGGCAAGCGGCGGCGTTTCGCATATCAGGGGATAAAGCATACTTCTCCGGCTGTGGTTTCTACGGTGCACAAGACACTCTTTGCGACGACGCTGGCAGGCATTACTTCAAGGAATGCTATATCGAGGGTTCCATTGATTTCATTTTTGGGAATGGAAGATCCATGTACAAGGTTAGTACTTAA 690 0.4797 MATLFLNSLHLVLVLSCIFYIATVTCTPYHYDDSNTLSSKQKQNHSWIGPIGHRVITVNINGGGHFRSVQEAVNAVPDNNRMNVLIQISAGYYIEKVVVPVTKPYITFEGEGRGVTVIEWHDRASDPGPNGQQLRTYRTASVTVFASYFSARNISFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKVST. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00470 229 ProSitePatterns Pectinesterase signature 2. 210 219 IPR033131 -
Seca10g00470 229 Gene3D - 22 229 IPR012334 -
Seca10g00470 229 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 48 227 - -
Seca10g00470 229 Pfam Pectinesterase 56 225 IPR000070 GO:0030599|GO:0042545
Seca10g00470 229 SUPERFAMILY Pectin lyase-like 53 226 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00470 Seca-Chr10 4138147 4140833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00470 1 226 Carbohydrate Esterase AT5G47500 66.524 7.96e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00470 - - cam:101501763 384.03