Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00466 ATGGAGGAACAGAACGAAGCACCAGACAACAGAGAACTCTACGCTCTCTTGAACTTGTCTCCGGAAGCTTCCGATGAAGAAATCCGCAGAGCTTATCGTCAATGGGCGCAAGTCTATCACCCCGATAAGTACCAAGCTCCTCACATGAAAGATATCGCTACGGAGAACTTTCAACGCGTATGTGAAGCGTATGAGATTTTGTCTGATCCAAATAAAAGGCAAATATATGATATCTATGGCATGGAAGGCTTGACCTCTGGTTTGGAACTTGGTCAAAGGCTGGATAAAGCCGAAGAGATCAAGGCAGAGCTGGAGAGATTGAAGAAGATGAGGGAACGGGAAAAAATGGCTGCCCATTTTCGATCTTCGGGTACAATCTTGGCCAATATGTCTTTGCCACACTGTGTAAATGGTGATGGCCTCTTCCGAGGAATGGCGATGACAAGTGAAATTCAGTCTCAGTTATCAAAGCGTAATGCTGTCACGATTGGTGGCAATTTAGCAGTTAATGGAAATGAAGGTGGTGGAGCCGCTACTGCATTATTTAGGCATCAAATTTCAAAAGTTTCATCAGTAGAATTTGTTGCTTCTGCTGGTTTACGTGCACTAATTGGGGTGCAAACATCTCGCAATCTATCATCACACTCAGCTGCAACAATGGGTATAGCAATGTCTTTGAAAGATGGTTCACTGAATCTTTCGAATTTATGGACCCGCCAACTATCAGAAACAGCAAGTGGACATATACAGCTTACTTTGGGACCACTATCAGCTATAGCTGTAGGGTGGCAAAAGAAAGATGAGAGAGGGTCTGCTGCTGGAGAAGTGAAGTTTGGCACAGGTTCTTTTGAGACAGCAGTCCATTATACTCATCGCTTTTCTTCTAAATCTCTTGGCTGCATTGCGGGAAAAATTGGAAGTTCTTCCCTTGAGATTGAAGTCGGTGGTGGGAGGAAGTTATCCAAATTCAGTACTGTGCGCTGGTTGTATATAATAGGAATTCAGGGTATTTTATGGAAGTTTGAACTCCACCGCGGGGGTCAGAAATTAATTATTCCTATTTTGCTGACAAGGCATTTGAACCCTTTGTTTGCTACTGGAGCATTCGTTGTTCCAGCATCCGTTTACTTTGTCCTGAAGAAACTTTTTTTTAAACCGTATTACATTAGAAGGAATAAGCAGAAGGCTCTAGAGAAGGAAGAGAAAACTTCTGCTCAGGTTCAAGAAGCAAAGGCTGCAGCAGAAAAGGCGCAGAAATTACAACATAATGTGGCTAATAGGAAAAGAAACAAGCAATTAGAAACGGGCGGACTTGTTATCATGAAAGCGCTATATGGAAATCAAAAAATTTTGAACAATTTAAATTCATCAAGTGAAACGAGTTTTGAGTCAACTTCAGAAGTCATTGATGTCACAATACCTCTGAATTTTCTAGTTAATGATTCTGGCCAACTTAAGCTTCATGAAGGTGTAAAAAAATCAGGAATCATGGGCTTTTGTGATCCATGTCCAGGAGAAGGTAAACAGTTGTATGTAGAGTACGCTTATGCTGGCAACCAGCACAAGGTTTGGGTTGGTGATTATGAAGAATTACTGATACCCCAGGGCACTCACAGGATATAG 1623 0.4196 MEEQNEAPDNRELYALLNLSPEASDEEIRRAYRQWAQVYHPDKYQAPHMKDIATENFQRVCEAYEILSDPNKRQIYDIYGMEGLTSGLELGQRLDKAEEIKAELERLKKMREREKMAAHFRSSGTILANMSLPHCVNGDGLFRGMAMTSEIQSQLSKRNAVTIGGNLAVNGNEGGGAATALFRHQISKVSSVEFVASAGLRALIGVQTSRNLSSHSAATMGIAMSLKDGSLNLSNLWTRQLSETASGHIQLTLGPLSAIAVGWQKKDERGSAAGEVKFGTGSFETAVHYTHRFSSKSLGCIAGKIGSSSLEIEVGGGRKLSKFSTVRWLYIIGIQGILWKFELHRGGQKLIIPILLTRHLNPLFATGAFVVPASVYFVLKKLFFKPYYIRRNKQKALEKEEKTSAQVQEAKAAAEKAQKLQHNVANRKRNKQLETGGLVIMKALYGNQKILNNLNSSSETSFESTSEVIDVTIPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGEGKQLYVEYAYAGNQHKVWVGDYEELLIPQGTHRI. 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00466 540 Pfam DnaJ-like protein C11, C-terminal 386 534 IPR024586 -
Seca10g00466 540 Gene3D DnaJ domain 1 109 IPR036869 -
Seca10g00466 540 PRINTS DnaJ domain signature 52 72 IPR001623 -
Seca10g00466 540 PRINTS DnaJ domain signature 14 32 IPR001623 -
Seca10g00466 540 PRINTS DnaJ domain signature 32 47 IPR001623 -
Seca10g00466 540 PRINTS DnaJ domain signature 72 91 IPR001623 -
Seca10g00466 540 Coils Coil 90 117 - -
Seca10g00466 540 SUPERFAMILY Chaperone J-domain 9 83 IPR036869 -
Seca10g00466 540 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Seca10g00466 540 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
Seca10g00466 540 CDD DnaJ 12 69 IPR001623 -
Seca10g00466 540 Coils Coil 390 430 - -
Seca10g00466 540 PANTHER CHAPERONE PROTEIN DNAJ 13 1 540 IPR042162 -
Seca10g00466 540 Pfam DnaJ domain 13 77 IPR001623 -
Seca10g00466 540 SMART dnaj_3 11 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00466 Seca-Chr10 4085449 4099784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00466 14 79 C2H2 Transcription Factor Family AT1G74250 44.118 5.39e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00466 K09531 - gmx:100817782 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00466 10 4085449 4099784 Seca10g00466 10 4085449 4099784 ECH