Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00446 ATGTGTCTGAACTTCTTCTCAATGTGTTCTCATCAACGACACGCTAACATGGTTGGCCTCAACTCAGTTCCTATTCCTAATTGGCTTCTCATTCTCAAGGAAGAGAAGTTTTTCACTCCTTGTTTGATTCATGACTCTGTAAAGAAGAACGAAAAGAATATTTTTTGCTTAGATTGCTGCACGAGCATTTGCCCCCACTGTTTGCCCCTTCACAACCCTCACGTCCTTCTGCAGATACGAAGATACATGTACAATGATGTATTACAGCTTGGTGATGCTCAGAGATTGTTGAATTGTTCCCTTGTTCAACCTTACACAACAAATAGAGCCAAGGTTGTGTTTTTGAAACAAAGGCCAACCTCTCGCTCTCTTAGGGGCTCTGGCAACCTTTGCATCATATGTCACCGTTGCCTCCAAGACCCATACATCTTCTGTTCTGTGTCATGCAAGGTTCAATTTTTGTTATTCATAGCAGGATCAATTCCAAGTAACTTTGAGTTTCTTTTTCTATTACGTACTCTACTTTGA 528 0.4091 MCLNFFSMCSHQRHANMVGLNSVPIPNWLLILKEEKFFTPCLIHDSVKKNEKNIFCLDCCTSICPHCLPLHNPHVLLQIRRYMYNDVLQLGDAQRLLNCSLVQPYTTNRAKVVFLKQRPTSRSLRGSGNLCIICHRCLQDPYIFCSVSCKVQFLLFIAGSIPSNFEFLFLLRTLL. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00446 175 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 26 150 - -
Seca10g00446 175 Pfam PLATZ transcription factor 80 151 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00446 Seca-Chr10 3880500 3882063 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca10g00446 PLATZ 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00446 - - gmx:100806286 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00446 10 3880500 3882063 Seca10g00446 10 3880500 3882063 ECH