Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00445 ATGCATTCTAGTGTATTAACTTATTCGCAACCAGATTCACCCCTCTCCCCTGGGAAGTATTCAAGGAAGAGTCTTGATGATGTTCGCTCCAATGGTTGGTTGGATGCCATGAAGGCCTCTTCACCTCCAAGAAAGAAGTTACCTAAAGGTTCAAATTTTCAGGTTGCTTCCATTGACTATGACATTGAAGAATATCGCTCATTCATGGTTGATTATCCTTCAGCATTAGACTCGTTTGAGGAAATTATTGACCGTGCAAAGAATAAGAAGGTTGCAGTGTTTCTGGATTATGATGGCACTCTTTCGCCAATAGTAGATGACCCTGACTCTGCCTTTATGTCTCAAGCTATGCGTACCACTGTGAGAAGCGTGGCAAGGTATTTTCCCACGGCAATTATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATCTAGTTAAACTAACGGAACTCTACTATGCTGGTAGCCATGGAATGGACATTATTGGCCCTTTTAGTCAGACTCCGTCCACTGATCATCAGGTGAGCATTATGGATCTTTTTATTGAGGGGAAAGAGACAACTCTCTTTCAACCTGCAAGAGAATTCCTGCCTATGATTGATGAGGTTTTTAGAACCCTCGTTGAGATTACTAAAGATATAATGGGTGCAAAAGTCGAAAATCACAAGTTTTGCGTTTCTGTACATTACCGTAACGTAGAAGAGAATAGTTGGACAACAATTGGACAACGTGTTCATGATATGTTGAAAAATTACCCTCCTTTACGTTCCACCCACGGACGGAAGGTTTTAGAGGTTCGTCCTGTGATTGACTGGAACAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCTAGGGTTAAATAATGATTGGGATGATGTGCTTCCTATCTACATTGGAGATGACAGAACCGATGAAGATGCTTTCAAGGTGCTGCGTGAGAGCAATCGAGGTTGTGGGATTTTGGTTTCATCAGTGAAGAAAGAAAGCAGCGCCTTCTACTCTCTCCGAGACCCAACTGAGGTCATGAAATTTCTCCAACTTCTGGTGAATTGGAAGCGGCCAGAAATAGAAGGAAAGTATGGGGAGAAGTAA 1092 0.4203 MHSSVLTYSQPDSPLSPGKYSRKSLDDVRSNGWLDAMKASSPPRKKLPKGSNFQVASIDYDIEEYRSFMVDYPSALDSFEEIIDRAKNKKVAVFLDYDGTLSPIVDDPDSAFMSQAMRTTVRSVARYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPFSQTPSTDHQVSIMDLFIEGKETTLFQPAREFLPMIDEVFRTLVEITKDIMGAKVENHKFCVSVHYRNVEENSWTTIGQRVHDMLKNYPPLRSTHGRKVLEVRPVIDWNKGKAVEFLLESLGLNNDWDDVLPIYIGDDRTDEDAFKVLRESNRGCGILVSSVKKESSAFYSLRDPTEVMKFLQLLVNWKRPEIEGKYGEK. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00445 363 MobiDBLite consensus disorder prediction 1 26 - -
Seca10g00445 363 MobiDBLite consensus disorder prediction 1 17 - -
Seca10g00445 363 FunFam Trehalose 6-phosphate phosphatase 198 357 - -
Seca10g00445 363 SUPERFAMILY HAD-like 92 352 IPR036412 -
Seca10g00445 363 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 18 354 IPR044651 GO:0004805|GO:0005992
Seca10g00445 363 NCBIfam trehalose-phosphatase 193 349 IPR003337 GO:0003824|GO:0005992
Seca10g00445 363 FunFam Trehalose 6-phosphate phosphatase 192 268 - -
Seca10g00445 363 NCBIfam HAD-IIB family hydrolase 93 312 IPR006379 -
Seca10g00445 363 CDD HAD_TPP 92 343 - -
Seca10g00445 363 Gene3D - 191 359 IPR023214 -
Seca10g00445 363 Gene3D - 91 168 IPR023214 -
Seca10g00445 363 Pfam Trehalose-phosphatase 94 338 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00445 Seca-Chr10 3870695 3877566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00445 87 348 Trehalose Biosynthesis Gene Families AT1G70290 26.449 4.79e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00445 K01087 - tcc:18606311 498.434