Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00442 ATGAACGCTTTCACACATGTTCCTCCTGGGTTTCGTTTCCATCCCACTGATGAAGAACTTGTTGATTACTACCTTAGGAAAAAGGTAGCTTCTAAAAGGATTGATCTAGATATCATAAAAGATGTAGATCTCTATAAAATTGAGCCATGGGATCTTCAAGAGTTAATTTGTTGCTTTTTTTGTTGGGATGAGACAGAATTGTGCAAAATAGGAACGGATGAACAAAACGATTGGTATTTCTTTAGTCATAAAGATAAGAAGTACCCAACAGGCACTCGTACGAACAGAGCTACAAAGGCAGGATTCTGGAAGGCAACAGGAAGGGACAAGGCAATATACTCAAGCAGGCAGCATTCCCTTATTGGCATGAGAAAGACTCTTGTGTTTTACAAAGGAAGAGCCCCAAATGGACAGAAATCTGACTGGATCATGCATGAGTACCGCCTAGAAACTAATGAAAATATTAATGGAACTACTTCTCAGGAAGAAGGGTGGGTTGTATGCAGAGTGTTCAAGAAAAGAATCACTACAGTAAGGAAGTATGATCATGACCACCTCTCATTCATGCAAGACCTTCAATCTTCCGCATCCCCAAGGGGACTAGTTTGTGATCATAATTCTCGCCCTTATGCATTCAAGCAGGAGTTGGAATTGCAATACCATGACGCTTTCCTCCAACTTCCACAACTAGAAAGCCCCAAAGTTAATAATACTCAATCTTGTAGCCCTCTTGTCCCTTATGCCTATGATAGCAATCATAATGGAAGTGATGCTTTGCAGTCCTCATCACTCACTCATGAACAACGATGCCAGCAATTGCTTTATGGTAGCAAAGGTGTGGACCAAATGACTGATTGGCGAGTACTTGACAAATTTGTTGCTTCTCAGCTCCAAGATGTTTCCAATGGGCAGGCTGAGGCTGAACAAATTACTTTGCTAGCAAACGCCTCCACAAAACAGGAAATTGGGCAGGAATATGCTTCAACCTCCACCTCCAGTTGCCAGATTGATCCCTGGAAGTGA 1023 0.4194 MNAFTHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDIIKDVDLYKIEPWDLQELICCFFCWDETELCKIGTDEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSSRQHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENINGTTSQEEGWVVCRVFKKRITTVRKYDHDHLSFMQDLQSSASPRGLVCDHNSRPYAFKQELELQYHDAFLQLPQLESPKVNNTQSCSPLVPYAYDSNHNGSDALQSSSLTHEQRCQQLLYGSKGVDQMTDWRVLDKFVASQLQDVSNGQAEAEQITLLANASTKQEIGQEYASTSTSSCQIDPWK. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00442 340 Gene3D NAC domain 16 176 IPR036093 GO:0003677|GO:0006355
Seca10g00442 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 260 - -
Seca10g00442 340 FunFam Nac domain-containing protein 86 16 176 - -
Seca10g00442 340 SUPERFAMILY NAC domain 5 173 IPR036093 GO:0003677|GO:0006355
Seca10g00442 340 ProSiteProfiles NAC domain profile. 7 173 IPR003441 GO:0003677|GO:0006355
Seca10g00442 340 Pfam No apical meristem (NAM) protein 8 149 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00442 Seca-Chr10 3844918 3848093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00442 1 337 NAC Transcription Factor Family AT1G62700 52.871 1.20e-120 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca10g00442 NAM 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00442 - - pvy:116105603 444.121