Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00438 ATGGCAGACGAAGCAAAAGCTAAAGGCAACGCAGCATTCTCTTCCGGCGACTTCGACGCCGCCATCCGTCACTTCTCGGATGCCATCGCTCTCTCCCCTGACAACCACGTCCTCTATTCCAACCGATCCGCCGCTTACGCCTCCCTCCAAAAGTACACCGAGGCCTTAACTGACGCCAAGAAGACCGTCGAACTCAAGCCTGATTGGTCCAAGGGCTACAGCCGTCTCGGCGCCGCTCATCTTGGCCTCGCCCAATACGACGACGCTGTTTCGGCTTACAAAAAGGGCCTTGAAATCGACCCCAATAATGAACCCCTCAAATCCGGTTTAGCTGATGCCCAGGCTCGTGCTGCGTCAGCTTCCAGGCCACGCTCTGCAAATCCCTTCGGTGACGCTTTCTCAGGCCCAGAGATGTGGGCCAGGCTCACCGCTGACCCTACCACTAGGGCTTACCTTCAACAACCCGATTTCGTGCAGATGATGCAGGATATTCAGAAAAATCCCAGCAATCTCAATTTGTATTTGAAAGATCAAAGAGTCATGCAAGCCATCGGGGTTTTGCTCAACGTGAAGATTCGAACCCCAAACGACGACACTGATTTGCCCGAGTCTCCTTCGCCTTCAGCGTCCGATAGGAAGAGAGCTGCTGAAACCGAGCCTGCGAAGCAACCCGAGCCTGAGCCTGTACCAGAACCTGAGCCTATGGAACTGACGGAGGAGGACAGGGACGCAAAGCAGAGGAAGGCTGAGGCTCAGAAGGAAAAGGAGGCGGGAAATGCAGCATACAAGAAGAAGGATTTTGACACCGCAATTCAACATTACTCAAAGGCTTTGGAGCTTGATGATGAAGACATATCGTATCTCACGAACCGCGCTGCCGTTTACTTGGAAATGGGAAAGTATGAGGAATGCATAAAAGATTGTGATAAGGCTGTTGAAAGAGGAAGAGAACTAAGATCAGACTTCAAGATGATAGCAAGAGCTTTGACAAGGAAAGGGAATGCTTTGGTCAAAATGGCAAAATGCTCGAAAGATTATGAACCTGCTATTGAGACTTACCAAAAAGCACTTACAGAGCACCGCAACCCAGACACCTTGAAGAAACTTAATGAAGCTGAAAAGGCTAAGAAAGAGCTAGAGCAACAAGAATACTTTGATCCAAAGTTGGCTGATGAAGAGAGAGAAAAAGGAAATGAATTCTTTAAGGAGCAGAAATATCCTGAGGCCGTGAAGCACTACACAGAGTCTATAAGAAGAAACCCAAACGATCCTAGGGCTTATAGTAACAGAGCAGCATGTTACACTAAACTGGGGGCAATGCCTGAGGGTTTAAAGGATGCAGAGAAGTGCATTGAGCTTGATCCAACATTTGTAAAGGGTTATACCAGGAAAGGTGCCGTTCAGTTTTTCATGAAAGAATATGACAAGGCTTTGGAGACATATAAGGAGGGGTTGAAACATGACCCTAACAACCAGGAGTTGCTTGATGGCATTGGAAGATGTGTGCAACAAATTAATAAGGCCAGTCGTGGAGATTTAAGCCCTGAAGAATTGAAGGAGAGACAGGTGTGTCACATTGCCAAGGCAATGCAGGACCCAGAGATACAGAACATTCTGCAAGACCCTGTTATGAGACAGGTATTGATTGATTTCCAGGAAAATCCTAAGGCTGCACAGGAACATATGAAGAATCCAATGGTCATGAACAAGATCCAAAAGCTGATCAGTGCTGGAATTGTCCAGATGAGGTAA 1752 0.4772 MADEAKAKGNAAFSSGDFDAAIRHFSDAIALSPDNHVLYSNRSAAYASLQKYTEALTDAKKTVELKPDWSKGYSRLGAAHLGLAQYDDAVSAYKKGLEIDPNNEPLKSGLADAQARAASASRPRSANPFGDAFSGPEMWARLTADPTTRAYLQQPDFVQMMQDIQKNPSNLNLYLKDQRVMQAIGVLLNVKIRTPNDDTDLPESPSPSASDRKRAAETEPAKQPEPEPVPEPEPMELTEEDRDAKQRKAEAQKEKEAGNAAYKKKDFDTAIQHYSKALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGNALVKMAKCSKDYEPAIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNEFFKEQKYPEAVKHYTESIRRNPNDPRAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFVKGYTRKGAVQFFMKEYDKALETYKEGLKHDPNNQELLDGIGRCVQQINKASRGDLSPEELKERQVCHIAKAMQDPEIQNILQDPVMRQVLIDFQENPKAAQEHMKNPMVMNKIQKLISAGIVQMR. 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00438 583 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Seca10g00438 583 PANTHER TPR REPEAT CONTAINING PROTEIN 2 555 - -
Seca10g00438 583 MobiDBLite consensus disorder prediction 210 226 - -
Seca10g00438 583 SUPERFAMILY TPR-like 389 502 IPR011990 GO:0005515
Seca10g00438 583 Pfam STI1 domain 526 575 IPR041243 -
Seca10g00438 583 Pfam STI1 domain 136 189 IPR041243 -
Seca10g00438 583 ProSiteProfiles TPR repeat profile. 251 284 IPR019734 GO:0005515
Seca10g00438 583 Coils Coil 362 382 - -
Seca10g00438 583 FunFam Putative stress-induced-phosphoprotein 1 125 193 - -
Seca10g00438 583 SMART tpr_5 2 35 IPR019734 GO:0005515
Seca10g00438 583 SMART tpr_5 390 423 IPR019734 GO:0005515
Seca10g00438 583 SMART tpr_5 70 103 IPR019734 GO:0005515
Seca10g00438 583 SMART tpr_5 36 69 IPR019734 GO:0005515
Seca10g00438 583 SMART tpr_5 326 363 IPR019734 GO:0005515
Seca10g00438 583 SMART tpr_5 458 491 IPR019734 GO:0005515
Seca10g00438 583 SMART tpr_5 424 457 IPR019734 GO:0005515
Seca10g00438 583 SMART tpr_5 251 284 IPR019734 GO:0005515
Seca10g00438 583 SMART tpr_5 285 318 IPR019734 GO:0005515
Seca10g00438 583 MobiDBLite consensus disorder prediction 194 260 - -
Seca10g00438 583 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Seca10g00438 583 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 511 583 - -
Seca10g00438 583 FunFam Stress-induced phosphoprotein 1 1 116 - -
Seca10g00438 583 Gene3D - 510 583 - -
Seca10g00438 583 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Seca10g00438 583 Gene3D - 126 192 - -
Seca10g00438 583 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Seca10g00438 583 Pfam Tetratricopeptide repeat 7 64 - -
Seca10g00438 583 Pfam Tetratricopeptide repeat 459 491 IPR001440 GO:0005515
Seca10g00438 583 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Seca10g00438 583 FunFam hsp70-Hsp90 organizing protein 3-like 389 503 - -
Seca10g00438 583 Gene3D Tetratricopeptide repeat domain 248 384 IPR011990 GO:0005515
Seca10g00438 583 MobiDBLite consensus disorder prediction 238 260 - -
Seca10g00438 583 SUPERFAMILY TPR-like 250 378 IPR011990 GO:0005515
Seca10g00438 583 ProSiteProfiles TPR repeat profile. 424 457 IPR019734 GO:0005515
Seca10g00438 583 Coils Coil 235 255 - -
Seca10g00438 583 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Seca10g00438 583 ProSiteProfiles TPR repeat profile. 390 423 IPR019734 GO:0005515
Seca10g00438 583 ProSiteProfiles TPR repeat profile. 458 491 IPR019734 GO:0005515
Seca10g00438 583 SMART CBM 532 571 IPR006636 -
Seca10g00438 583 SMART CBM 135 174 IPR006636 -
Seca10g00438 583 Gene3D Tetratricopeptide repeat domain 389 509 IPR011990 GO:0005515
Seca10g00438 583 FunFam Stress-induced phosphoprotein 1 248 382 - -
Seca10g00438 583 Pfam TPR repeat 258 299 - -
Seca10g00438 583 Pfam TPR repeat 397 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00438 Seca-Chr10 3819044 3824077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00438 389 501 U-box Gene Family AT3G07370 28.319 3.50e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00438 K09553 - gmx:100816776 975.311