Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca10g00437 | ATGGCTGGCACAGCAGAATCCGCCGTTACCAACCGTAACCCAGCAGACTTCATCAAGTCCTCATGCAGGGCCACTCGCTACCCTGTTTTATGCGTTCAATGTCTTTTGGGGTATGCGAGCGTGATTCGCCAAAGTGAGCGACAACTGGCCATGGCTGCTTTATCAGTGAGCATATCCAGGACCCGATCGAGTGCATCATTTGTGAAGAAGATCTCCAAAGCAAGGGGCATGAAGCCTAGGGAGTACAGAGCTGTACAAGACTGCATAGAGAACATAGGTGATAGTGTGGACCGTCTTAGCCAATCGGTTAAGGAGTTAGGCCGTACGGGTGAGGCTGTAGGAGAGGACTTCGTATGGCACATGAGCAACGTCCAAACTTGGGTTAGTGCTGCTCTCACCGATGACAATACTTGTCTTGATGGCTTTGCTGGTTTTGGCATGAATGGAAACGTGAAGACTGCCATCAAGAACAAGATTGTCAATGTTGCTCAAGTAACCAGCAATGCACTCGCATTGGTTAATCGCTTTGCCTCAAGGCACCCTCACCCACACGCTCAAACTGATCATACCGATTCTCCTTAA | 582 | 0.4948 | MAGTAESAVTNRNPADFIKSSCRATRYPVLCVQCLLGYASVIRQSERQLAMAALSVSISRTRSSASFVKKISKARGMKPREYRAVQDCIENIGDSVDRLSQSVKELGRTGEAVGEDFVWHMSNVQTWVSAALTDDNTCLDGFAGFGMNGNVKTAIKNKIVNVAQVTSNALALVNRFASRHPHPHAQTDHTDSP. | 194 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca10g00437 | 193 | NCBIfam | pectinesterase inhibitor domain | 7 | 174 | IPR006501 | GO:0004857 | |
| Seca10g00437 | 193 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 16 | 176 | IPR035513 | - | |
| Seca10g00437 | 193 | CDD | PMEI-like_3 | 20 | 178 | - | - | |
| Seca10g00437 | 193 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 14 | 176 | IPR035513 | - | |
| Seca10g00437 | 193 | FunFam | Pectin methylesterase inhibitor 1 | 13 | 176 | - | - | |
| Seca10g00437 | 193 | SMART | PMEI_2 | 13 | 172 | IPR006501 | GO:0004857 | |
| Seca10g00437 | 193 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 13 | 172 | - | - | |
| Seca10g00437 | 193 | Pfam | Plant invertase/pectin methylesterase inhibitor | 16 | 172 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca10g00437 | Seca-Chr10 | 3813345 | 3813926 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca10g00437 | 18 | 173 | Carbohydrate Esterase | AT3G14310 | 32.704 | 1.42e-23 | 95.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca10g00437 | - | - | psat:127120659 | 286.574 |