Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00430 ATGGGTCGTATGCACAGTCGTGGGTTGGCGCCACTGCAACCTATTTCTTTCGCTGCGCTTTCAATTCCATTTTGTTCTCTTTCTTACGCTCTGTTTTGTTTGTTTGATTGCAGTAAGGGGATATCCTCCTCCGCTTTACCATACAAGAGGACTCCGCCTAGTTGGCTCAAGATCTCTTCCCAAGATGTTGAAGAGAATATATGCAAGTTCGCGAAGAAGGGTTTGACACCATCTCAAATTGGTGTCATTCTCCGAGATTCTCATGGCATTGCTCAGGTCAAGAGCGTCACTGGCAGCAAAATCCTCCGCATCCTCAAAGCTCATGGACTTGCGCCTGAGATTCCGGAGGATCTGTACCATCTAATAAAGAAGGCAGTTTCAATTCGGAAGCATCTGGAGAGGAACAGAAAGGACAAGGACTCCAAGTTCAGATTGATCCTTGTCGAGAGCAGAATCCACCGACTTGCTCGTTATTACAAGAAAACCAAGAAGCTCCCCCCTGTGTGGAAATAG 513 0.4678 MGRMHSRGLAPLQPISFAALSIPFCSLSYALFCLFDCSKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00430 170 Pfam Ribosomal S13/S15 N-terminal domain 38 90 IPR012606 GO:0003735|GO:0005840|GO:0006412
Seca10g00430 170 Gene3D - 65 112 - -
Seca10g00430 170 CDD Ribosomal_S15p_S13e 100 170 IPR000589 GO:0003735|GO:0005840|GO:0006412
Seca10g00430 170 Gene3D - 113 170 - -
Seca10g00430 170 SMART Ribosomal_S13_N_2 34 90 IPR012606 GO:0003735|GO:0005840|GO:0006412
Seca10g00430 170 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 170 IPR023029 -
Seca10g00430 170 FunFam 40S ribosomal protein S13 65 112 - -
Seca10g00430 170 FunFam 40S ribosomal protein S13 113 170 - -
Seca10g00430 170 Pfam Ribosomal protein S15 104 164 IPR000589 GO:0003735|GO:0005840|GO:0006412
Seca10g00430 170 SMART Ribosomal_S15_2 100 170 IPR000589 GO:0003735|GO:0005840|GO:0006412
Seca10g00430 170 SUPERFAMILY S15/NS1 RNA-binding domain 96 169 IPR009068 -
Seca10g00430 170 ProSitePatterns Ribosomal protein S15 signature. 128 158 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00430 Seca-Chr10 3763362 3765748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00430 1 170 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 77.059 2.06e-88 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00430 K02953 - egr:104442247 265.003