Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00428 ATGAATTCAGTCCATCTCCTCCTCTCTCTGTTTCTGCTGGTTGCATTTCCCATCCCCCACACGGTTTGTGGAAATGCAGAGCTCAGAGCTCTGATGGACTTGAAGTCCTCTCTGGACCCAGAGGGCAAGATCCTTAGCTCGTGGATCAGTGATGGTGACCCATGCAGTGGCTTGTTCGAAGGGATTGCGTGCAACGAGCACCGGAAAGTGGCCAACATCTCCTTGCAAGGAAAGGGCCTTTCTGGCTGGTTATCTCCAGCTGTGGCTGAACTCAAATGCTTGTCAGGCTTGTACTTGCATTACAACAATCTCTCTGGTGAGATACCCCCTCAGATTTCAAATCTCACTGATCTGGTCGATCTCTATCTCGACGTGAATAGTCTTTCTGGAACCATTCCTCCTGAGGTCGGCAAGATGGCTAGTCTCCAGGTGCTCCAGTTGGGCGATAACCAATTGGTGGGAAATATACCCACACAGATGGGTTCCTTGAAGCAGCTCAGTACTCTTGCTTTGCAATATAACAAGTTAACTGGCCAAATTCCTCTTAGCTTGGGGAACTTGGAGAAGTTAAGCAGGCTAAATTTGAGCTTCAACAACTTCAGCGGTGCCATTCCAGCAACACTAGCCCGTATTTCAAACTTGGAAGTTCTAGATATTCAAAACAATTCTCTATCGGGTATTGTTCCTTCTGCATTGAAGAGACTTGGGGAGGGATTCCAAGGTGCAAACAACCCAGGCTTATGTGGAGTTGGGTTTTCCACTTTGAGAGCTTGCAACAAAGATCAAGATTTAAACGTTAACCATATTGATACATCAGATAAAGACCTACCCCAAAAAAGTAATCCTGGAAAGGCTCTCCCGGAGCCTGCAAATATCCAGTTGCCTTGTAACCAGACTCACTGCTCAAAATCAAGAAGGTTTCCTCAAGCTGTCATCACAGCAGGTGTTATAAGTATCATTCTCACATTCATAGGTGCTGGATTTTTTATATTTGTCAGATACCGCCGTCAAAAACAGAGGATTACCTCAAATTCTTCTGAAGGGAAACTTAGTCCTGACCAGCCTAAAGAGTTCTACAGAAAAAGTCCATCTGCACTTGTTAATCTTGACTATTATAATGGATGGTATCCATTGTCTGATGATCAAAATACTGGTGGATTATCCAATGAATATCTAAACCAATTCAGATTTAATGTAGATGAGGTTGAATCTGCAACACAGTACCTTTCGGAAGCCAATTTATTGGGTAAGAGCAAATTCTCAGCAGTTTATAAAGGAGTTCTCAGAGATGGTTCTCTTGTGGCTATTAGAAGCATTAATGTAACATGCTGCAAGACCGAGGAAGCCGAATTTGTAAAGGGGTTGAGTTTACTAACCTCACTGAGACATGAAAACCTTGTCAAGCTGAGAGGTTTCTGCTGCTCAAGGAGTAGAGGTGAATGTTTCCTTATCTATGACTTTGCCACAATGGGTAACCTGTCTCAATATCTTGACATTGAAGATGGAAGTGGCCATGTGCTTGAGTGGTCCAAGAGGGTTTCTATCATCAAGGGCATTGCAAAGGGTATTGGATATCTGCACAGCAATGAAGCAAACAAACATACAATAGTACACCAGAATATTTCGGTGGAAAATGTTCTCCTTGACAATCAGTTTAACCCATTGATCATGGATGCTGGACTCCCTAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCTCTAAAAGTAAGTGCTGCCATGGGATACCTAGCTCCCGAATACATTACTACTGGACGCTTTACTGAGAAGAGCGACATATACGCATTTGGGGTTATTGTGCTTCAAGTTCTATCTGGCAAGAAGGCAATAGGTGGTTCAATACGGATGGCAGTTGAGACTTCAAGATTTGATGATTTTGTTGACACAAATCTTGTGGGAAGATATTCTAAATCTGAAGCAGCAACGCTTTCAAAGCTTGCAATGCTATGTATCCATGAGCTTCCTGACCAAAGACCAACCATGGTGGATGTGATTCAGGAGCTTAGTGTGTTTCCTGCTCATTCGTAA 2046 0.433 MNSVHLLLSLFLLVAFPIPHTVCGNAELRALMDLKSSLDPEGKILSSWISDGDPCSGLFEGIACNEHRKVANISLQGKGLSGWLSPAVAELKCLSGLYLHYNNLSGEIPPQISNLTDLVDLYLDVNSLSGTIPPEVGKMASLQVLQLGDNQLVGNIPTQMGSLKQLSTLALQYNKLTGQIPLSLGNLEKLSRLNLSFNNFSGAIPATLARISNLEVLDIQNNSLSGIVPSALKRLGEGFQGANNPGLCGVGFSTLRACNKDQDLNVNHIDTSDKDLPQKSNPGKALPEPANIQLPCNQTHCSKSRRFPQAVITAGVISIILTFIGAGFFIFVRYRRQKQRITSNSSEGKLSPDQPKEFYRKSPSALVNLDYYNGWYPLSDDQNTGGLSNEYLNQFRFNVDEVESATQYLSEANLLGKSKFSAVYKGVLRDGSLVAIRSINVTCCKTEEAEFVKGLSLLTSLRHENLVKLRGFCCSRSRGECFLIYDFATMGNLSQYLDIEDGSGHVLEWSKRVSIIKGIAKGIGYLHSNEANKHTIVHQNISVENVLLDNQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKKAIGGSIRMAVETSRFDDFVDTNLVGRYSKSEAATLSKLAMLCIHELPDQRPTMVDVIQELSVFPAHS. 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00428 681 FunFam Protein NSP-INTERACTING KINASE 2 137 259 - -
Seca10g00428 681 SUPERFAMILY Protein kinase-like (PK-like) 384 675 IPR011009 -
Seca10g00428 681 Gene3D Transferase(Phosphotransferase) domain 1 489 680 - -
Seca10g00428 681 Pfam Protein tyrosine and serine/threonine kinase 413 674 IPR001245 GO:0004672|GO:0006468
Seca10g00428 681 Gene3D Ribonuclease Inhibitor 175 244 IPR032675 -
Seca10g00428 681 CDD STKc_IRAK 415 674 - -
Seca10g00428 681 Gene3D Ribonuclease Inhibitor 24 174 IPR032675 -
Seca10g00428 681 FunFam Protein NSP-INTERACTING KINASE 2 488 678 - -
Seca10g00428 681 SMART LRR_typ_2 187 210 IPR003591 -
Seca10g00428 681 SMART LRR_typ_2 91 115 IPR003591 -
Seca10g00428 681 SMART LRR_typ_2 211 234 IPR003591 -
Seca10g00428 681 SMART LRR_typ_2 139 163 IPR003591 -
Seca10g00428 681 SUPERFAMILY L domain-like 23 234 - -
Seca10g00428 681 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 160 677 IPR046959 -
Seca10g00428 681 ProSiteProfiles Protein kinase domain profile. 409 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00428 681 FunFam Leucine-rich repeat receptor-like kinase 26 133 - -
Seca10g00428 681 FunFam Protein NSP-INTERACTING KINASE 2 380 487 - -
Seca10g00428 681 Gene3D Phosphorylase Kinase; domain 1 379 487 - -
Seca10g00428 681 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Seca10g00428 681 Pfam Leucine rich repeat 189 235 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00428 Seca-Chr10 3744238 3747892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00428 6 522 Miscellaneous Gene Families AT4G22730 58.254 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Seca10g00428 PK_Tyr_Ser-Thr 1.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00428 - - gmx:100777169 1155.97