Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00419 ATGAAGATAATATCATTTTCTCAGCAAGGACCGCGAGCTATATGCATTCTTTCTGCAAATGGAGTCATATCAAGTGTCACCCTTCGTCAGCCTGATTCTTCTGGAGGCACATTGACATATGAGGGACGGTTTGAAATTCTATCTTTGTCTGGCTCATTCATGCCAAGTGAAAGTGGTGGAACACGGAGCAGATCTGGTGGCATGAGCGTTTCTTTAGCGAGTCCAGATGGACGTGTTGTAGGCGGTGGGGTAGCTGGTCTATTGGTGGCTGCAAGTCCTGTGCAGGTTGTGGTAGGCAGTTTTCTGGCAGGTGACCAACATGAGGAGATGCAAAAAAAACATAAACATGAGGTGATATCAACAACAGTAACACCAACTGCAGCTGTTCCCGTGTCTATTGCTGATCCAATACCTAATCTCTCATCTTCGCCTTCCTTCCGGGGAGATAATTGGTCTGCAACGCGAGCAGTGGCGGAGACCAGGAATAACCCAACTGACATTAATGTGTCACTTGCCGGAGGTTAA 525 0.4724 MKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGDQHEEMQKKHKHEVISTTVTPTAAVPVSIADPIPNLSSSPSFRGDNWSATRAVAETRNNPTDINVSLAGG. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00419 174 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 145 IPR039605 GO:0003680
Seca10g00419 174 SUPERFAMILY AF0104/ALDC/Ptd012-like 3 115 - -
Seca10g00419 174 CDD DUF296 2 78 IPR005175 -
Seca10g00419 174 ProSiteProfiles PPC domain profile profile. 1 122 IPR005175 -
Seca10g00419 174 FunFam AT-hook motif nuclear-localized protein 1-like 1 119 - -
Seca10g00419 174 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 101 IPR005175 -
Seca10g00419 174 Gene3D - 1 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00419 Seca-Chr10 3661741 3666129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00419 1 171 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 70.286 8.32e-75 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00419 - - csav:115716779 249.98