Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00413 ATGGATCCAATAACAGCGCATGGGCATTCTCTTCCTCCTCCTTTCCACACAGCAAGAGACCTCCATCTGCACCACCAACATCAGTTCCACTCCTTACAACAGCAAAACACAGAAGACGAACAAAGCGGAAGCAGCGGTGGTCTTAACCTCGCACACAAAAGGGAACGTGAAGAAAATAACAACAACAGTGGTGGTGAAGTGAAGCAAGAGGGAGGTGAAACTGAGATGACAAGAAGACCTCGAGGAAGACCCGCTGGATCCAAGAACAAACCCAAGCCACCTATTATCATCACTCGTGACAGCGCAAATGCCCTAAAAACCCACGTCATGGAGGTCGCTGACGGTTGTGACATCGTAGACAGTGTCTCCAACTTCGCAAGGCGTCGTCAGAGAGGGGTTTGTATCATGAGTGGCACTGGAACCGTCACTAATGTAACGCTCAGGCAACCCGCTTCTTCTGGCGCTGTCGTCACTCTTCATGGAAGGTTCGAGATCCTCTCACTCGCTGGATCGTTCTTGCCACCGCCAGCTCCACCGGCTGCTTCCGGTTTGACCATATATTTAGCAGGTGGACAAGGACAGGTTGTAGGAGGAAGTGTTGTGGGGTCACTCATTGCTTCGGGGCCAGTGGTTATCATGTCAGCTTCATTTAGCAACGCTGCTTATGAGAGACTTCCTTTGGAAGAAGAGGACCCTTCGATGCCACTGCAAGGAGGTTCAATTGGGTCACCCGGTGGTGGTGGAGTTGGGCAACAACAGCAACAGCAACAGCAACAGCAACTTTTAGGGGATGCGACGGCTCCACTGTTTCATGGTTTGCCTCCGAATCTTCTCAATTCTGTTCAGATGCCGTCCGAGAATTTCTGGCCAAGTGGTCGCTCTCCTTACTGA 891 0.5129 MDPITAHGHSLPPPFHTARDLHLHHQHQFHSLQQQNTEDEQSGSSGGLNLAHKREREENNNNSGGEVKQEGGETEMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVDSVSNFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGSLIASGPVVIMSASFSNAAYERLPLEEEDPSMPLQGGSIGSPGGGGVGQQQQQQQQQQLLGDATAPLFHGLPPNLLNSVQMPSENFWPSGRSPY. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00413 296 Gene3D - 105 233 - -
Seca10g00413 296 MobiDBLite consensus disorder prediction 230 296 - -
Seca10g00413 296 CDD DUF296 106 173 IPR005175 -
Seca10g00413 296 Pfam Plants and Prokaryotes Conserved (PCC) domain 106 219 IPR005175 -
Seca10g00413 296 SUPERFAMILY AF0104/ALDC/Ptd012-like 102 232 - -
Seca10g00413 296 FunFam AT-hook motif nuclear-localized protein 105 232 - -
Seca10g00413 296 MobiDBLite consensus disorder prediction 28 48 - -
Seca10g00413 296 ProSiteProfiles PPC domain profile profile. 102 239 IPR005175 -
Seca10g00413 296 MobiDBLite consensus disorder prediction 246 264 - -
Seca10g00413 296 MobiDBLite consensus disorder prediction 278 296 - -
Seca10g00413 296 MobiDBLite consensus disorder prediction 26 95 - -
Seca10g00413 296 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 290 IPR014476 GO:0003680
Seca10g00413 296 PIRSF ESCAROLA 17 295 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00413 Seca-Chr10 3602483 3603373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00413 1 296 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 56.471 6.66e-86 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00413 - - gmx:100781436 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00413 10 3602483 3603373 Seca10g00413 10 3602483 3603373 ECH