Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00396 ATGGCCTCCACTTGTACCTTGTTATTTGCTTTTACAATGATGTTAACCATCATGGGAGAGCCAGCAGTAGCTGTATTTCGACCCAGTCGATGGGCTCTTGCTCATGCCACTTTTTATGGTGATGAGACAGCTTCTGCCACCATGGGAGGAGCATGTGGGTATGGGAATTTGTTTCAGAATGGTTATGGGACAGATACAGCGGCTTTAAGCTCCACATTGTTCAACAATGGTTATGCGTGCGGGACTTGTTACCAAATAAAATGCTACCAATCCAGTGCTTGCTATAAAAATGTGGCCTTCACCACAGTCACTGCCACCAATCTCTGTCCTCCTAATTGGTCACAGCCCTCTGATAACGGTGGCTGGTGCAACCCACCAAGAGTGCATTTTGACATGGCTAAGCCTGCCTTCATGAAAATTGCTCAGTGGAAAGCTGGCATCGTCCCTGTTTTGTACCGCAGAGTGCCATGCCAGAGGAAGGGAGGGCTTCGATTCTCTTTCCAAGGAAATGGGTATTGGCTATTAGTGTATGTGATGAATGTGGGAGGTGGAGGAGATATTGCCAACATGTGGGTCAAAGGAAGCAGAACAGGATGGATTAGAATGAGCCACAACTGGGGGGCTTCTTACCAAGCATTTGCAACTCTGGGAGGTCAATCTCTTTCTTTCAGGATTACTTCATACACAACCAGGGAGACTATTATTGCATGGAATGTTGCTCCTTCCAATTGGAATGTTGGACTAACCTATTCCACCACCCTCAACTTCCGCTGA 774 0.469 MASTCTLLFAFTMMLTIMGEPAVAVFRPSRWALAHATFYGDETASATMGGACGYGNLFQNGYGTDTAALSSTLFNNGYACGTCYQIKCYQSSACYKNVAFTTVTATNLCPPNWSQPSDNGGWCNPPRVHFDMAKPAFMKIAQWKAGIVPVLYRRVPCQRKGGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSRTGWIRMSHNWGASYQAFATLGGQSLSFRITSYTTRETIIAWNVAPSNWNVGLTYSTTLNFR. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00396 257 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Seca10g00396 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Seca10g00396 257 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Seca10g00396 257 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Seca10g00396 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Seca10g00396 257 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Seca10g00396 257 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Seca10g00396 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Seca10g00396 257 Pfam Lytic transglycolase 66 152 IPR009009 -
Seca10g00396 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Seca10g00396 257 PANTHER EXPANSIN-A15 7 252 IPR002963 GO:0009664
Seca10g00396 257 SMART dpbb_1 66 152 IPR007112 -
Seca10g00396 257 SUPERFAMILY Barwin-like endoglucanases 30 180 IPR036908 -
Seca10g00396 257 Gene3D - 163 257 IPR036749 -
Seca10g00396 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Seca10g00396 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 162 IPR007112 -
Seca10g00396 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Seca10g00396 257 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Seca10g00396 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Seca10g00396 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Seca10g00396 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Seca10g00396 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Seca10g00396 257 CDD DPBB_EXPA_N 30 157 - -
Seca10g00396 257 Gene3D - 17 158 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00396 Seca-Chr10 3480979 3482357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00396 13 257 Expansin Gene Family AT1G12560 70.204 4.18e-129 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00396 - - gmx:100807807 503.056