Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00392 ATGCAAGAACCTGCAGGCTTGGGAATGATGGGTTTAAGCGGAGAGGTCTCAGCTTCCGGAGATCACCACCGACAACTGAAGGCGGAGATAGCCACTCATCCTCTCTATGAACAGCTTCTCGCTGCTCATGTCTCCTGTCTCCGAGTTGCCACTCCGATTGATCAGCTACCACTCATTGATGCCCAGTTATCTCAGTCACACCATCTTCTACGCTCTTATGTTTCTCAACACACTCATTCTCTTTCTCCTCATGACCGCCAAGAACGTGACAACTTCCTGGCACAATATTTGATAGTTTTGTGTACTTTCAAAGAACAGCTTCAGCAACATGTCAGAGTCCATGCCGTCGAGGCTGTCATGGCCTGCCGTGATATCGAAAATACCTTACAAGCTCTCACAGGAGTGAGTTTGGGAGAAGGAAGTGGTGCGACAATGTCAGATGATGAAGATGATATGCAGATGGATTTTTCTTTAGATCAGTCCAGTGCTGATGGCCATGACATGATGGGATTTGGTCCTTTACTTCCTACTGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTTAAACAGGGTTTTAAGTCAAGAATTGAAGATGTTAGGGAGGAAATATTAAGGAAAAGAAGAGCTGGCAAATTACCCGGTGACACTACTACTGTGTTAAAGAACTGGTGGCAGCAACATGCAAAGTGGCCTTACCCAACTGAAGATGACAAAGCAAAACTTGTGGAAGAGACAGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATCAACCAAAGGAAACGCAATTGGCACAGCAACTCTCAATCAGTTACCTCTTTGAAGTCCAAGCGCAAGAGGTAG 864 0.4514 MQEPAGLGMMGLSGEVSASGDHHRQLKAEIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSQSHHLLRSYVSQHTHSLSPHDRQERDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDDMQMDFSLDQSSADGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00392 287 ProSiteProfiles ELK domain profile. 190 210 IPR005539 GO:0003677
Seca10g00392 287 Gene3D - 209 283 - -
Seca10g00392 287 ProSiteProfiles 'Homeobox' domain profile. 210 273 IPR001356 GO:0003677
Seca10g00392 287 SUPERFAMILY Homeodomain-like 212 277 IPR009057 -
Seca10g00392 287 Pfam KNOX2 domain 82 133 IPR005541 GO:0003677|GO:0005634
Seca10g00392 287 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 274 - -
Seca10g00392 287 Pfam Homeobox KN domain 230 269 IPR008422 GO:0003677|GO:0006355
Seca10g00392 287 Pfam KNOX1 domain 26 67 IPR005540 GO:0003677|GO:0005634
Seca10g00392 287 SMART KNOX1_2 24 68 IPR005540 GO:0003677|GO:0005634
Seca10g00392 287 FunFam homeobox protein knotted-1-like 3 isoform X1 211 272 - -
Seca10g00392 287 SMART HOX_1 212 277 IPR001356 GO:0003677
Seca10g00392 287 SMART KNOX2_2 79 134 IPR005541 GO:0003677|GO:0005634
Seca10g00392 287 CDD homeodomain 213 274 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00392 Seca-Chr10 3438261 3443116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00392 1 286 Homeobox Transcription Factor Family AT1G62990 80.205 1.65e-173 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca10g00392 KNOX2 2.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00392 - - gmx:100782179 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00392 10 3438261 3443116 Seca10g00392 10 3438261 3443116 ECH
Seca10g00392 10 3438261 3443116 Seca10g00392 10 3438261 3443116 PCT