Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00391 ATGGCTCATTTGGTTTATGGCGAAACTCCATCCTTCGGAGGCTCACACCATGGACAGGCTCAACAATCTGTTCCCTTTCCAACCACTTCCACTTCCTTAAGGACTCTGCTCTTACATGGCAACTTGGAAATATGGGTTCATGAGGCCAGAAACCTTCCTAACATGGACATGTTTCACAAGAAGATGGGGGACATGTTTTCCAGGTTACCTAAAAGACTTGGCAACAAAATTGAAAGCCGCGTATCCCATAATTTGACCAGTGATCCATATGTCACGGTGTCTGTGGCGGGTGTTGTCATTGCAAGGACTTTTGTCATCAGAAACAATGAGAACCCTGTTTGGATGCAGCATTTTAATGTCCCCGTTGCACATGTTTCTGCTGAAGTACACTTCGTTGTAAAAGACAGCGACATTGTAGGCTCACAGATTATTGGTGCAGTGGGAATTCCTGTGGAACAGTTTTGGAATGGTACAAAAGTTGAGGGCTTTTTCCCCATCCTTAGTGATAAAGAGAAAACCGTTAAAGCTGGAGCAGTATTGAGTTTATCCATTCAGTACACTCCTGTTGATAAGGTGGCCCTTTATAGTCATGGAGTAGGTGCTGCTCCTCATTATCAAGGGGTTCCTGATACATACTTTCCCCTTAGAAAGGGTGGCAAAGTGACACTTTATCAAGATGCTCATGCTGAAGAAGGTTGCCTTCCCAGTTTGAAGGTTGATGGGGATGTGAATTATAAGCATGGAAGTTGTTGGCATGACATCTTTGAAGCAATACGTCAGGCACGTCGATTAGTGTACATTGTGGGTTGGTCTGTGTACTATAATGTTAGTCTCATTCGGGATGCAGCAGGTGATGACAAAGTTTCCACTTTAGGTGACCTTCTCAAAGCCAAATCACAGGAAGGTGTGAGAGTGCTGCTCCTTGTGTGGGATGATCCTACTTCTAGAAGCATGCTTGGATTTAAAACGAATGGAAAAATGGGCACTCGTGATGAGGACACTCGCCATTTTTTCAAACACTCTTCAGTACGAGTGCTTCTTTGCCCACGAGCTGGTAGAAAAGGACATAGCTTGCTCAAACAAACGGAAGCTGGAACAATCTATACCCATCATCAGAAGACAGTCATTGTGGATGCTGATGCAGGTCACAATAAAAGAAAGATCATAGCTTTCATCGGAGGTCTTGATTTATGTGGAGGTCGATATGATACCCCGAAACATTCTCTCTTTAGGACTTTGCAGACAACACACAAAGATGACTATCATAATCCTAACTTTGAGGGGCCTGTTACTGGTTGTCCAAGACAACCATGGCATGATTTGCACTCCCAAGTGGATGGTCCAGCTGCATATGACATCCTCACCAATTTTGAGGAGCGTTGGTTAAGGGCTTCAAAAATGCATAGACTTCAAAAAATTAGAAGTTCACAGGATGATTCATTACTGAAAATTGATAGAATCTCTGACATTATTGGCATTGATGAAGTTCCTTGTCTAAATGAAGATAACCCAGAGACTTGGCATGTCCAGGTCTTCCGTTCAATCGATTCCAATTCTGTGAAAGGATTTCCCAAGGAACCAAAAGAGGCTATAAAAAGGAACTTGCTTTGTGGAAAGAATGTACTGATAGACATGAGCATACATTCTGCGTATGTCAAGGCAATCCGATCTGCCCAAAAGTTCATCTATATTGAGAATCAATACTTCCTTGGCTCATCCTATAATTGGGATTCTTACAAAGACATGGGTGCAAACAACTTAATTCCAATGGAAATTGCGCTAAAAATAGCCAACAAAATCAAACAAAAGGAGAGATTCTCTGTGTATATAGTCATTCCTATGTGGCCTGAAGGTGTACCCTCAAGTAATTTTATGCAGCGGATTCTATTTTGGCAGTTCAAAACAATGGAAATGATGTATGAAACGATTTACAAGGCGTTACAGGAGGCTGGGCTTGAAAATGAGTATGAACCACAGGACTACTTGAATTTCTTTTGCCTTGGCAATCGTGAGCTCCCTGCAGATAATGACAACATTTTAAATGCTGTAAATCCTACTGGAGAGAACACTCCTCAGGTACTCACTCAAAAGAACAGGAGATTCATGATTTATGTTCATTCAAAAGGAATGATAGTGGATGATGAATATGTGTTATTGGGGTCTGCAAACATAAACCGGCGATCCATGGGAGGCACCAGAGACACAGAGATTGCAATGGGAGCATATCAACCTAATCATACTTGGGCAACCAACCAATCTAAACCTCGTGGCCAGGCAAGATTTATAAATTTAATTATAGTGTATGGTTATAGAATGTCACTATGGAGCGAGCATATAGGTGATGTGGAAGAATGTTTCGAGCGACCAGAGACGGTTGAATGCGTGAGAAGGATAAGGTCATTGAGTGAGCATAACTGGAGACAGTACGCAGCTGATGAGGTAACTGAAATGAAAAGTCATCTCCTAAAATACCCTCTTGAAGTTGATTCAAAGGGTAAGGTCAAGCCTCTTTCTGGCTGTGAGACATTCCCGGATGTTGGTGGAAAAATAAAGGGCACCTTCACTCTACTTAAAGTTAAAGAAAATCTCACCATCTGA 2598 0.4207 MAHLVYGETPSFGGSHHGQAQQSVPFPTTSTSLRTLLLHGNLEIWVHEARNLPNMDMFHKKMGDMFSRLPKRLGNKIESRVSHNLTSDPYVTVSVAGVVIARTFVIRNNENPVWMQHFNVPVAHVSAEVHFVVKDSDIVGSQIIGAVGIPVEQFWNGTKVEGFFPILSDKEKTVKAGAVLSLSIQYTPVDKVALYSHGVGAAPHYQGVPDTYFPLRKGGKVTLYQDAHAEEGCLPSLKVDGDVNYKHGSCWHDIFEAIRQARRLVYIVGWSVYYNVSLIRDAAGDDKVSTLGDLLKAKSQEGVRVLLLVWDDPTSRSMLGFKTNGKMGTRDEDTRHFFKHSSVRVLLCPRAGRKGHSLLKQTEAGTIYTHHQKTVIVDADAGHNKRKIIAFIGGLDLCGGRYDTPKHSLFRTLQTTHKDDYHNPNFEGPVTGCPRQPWHDLHSQVDGPAAYDILTNFEERWLRASKMHRLQKIRSSQDDSLLKIDRISDIIGIDEVPCLNEDNPETWHVQVFRSIDSNSVKGFPKEPKEAIKRNLLCGKNVLIDMSIHSAYVKAIRSAQKFIYIENQYFLGSSYNWDSYKDMGANNLIPMEIALKIANKIKQKERFSVYIVIPMWPEGVPSSNFMQRILFWQFKTMEMMYETIYKALQEAGLENEYEPQDYLNFFCLGNRELPADNDNILNAVNPTGENTPQVLTQKNRRFMIYVHSKGMIVDDEYVLLGSANINRRSMGGTRDTEIAMGAYQPNHTWATNQSKPRGQARFINLIIVYGYRMSLWSEHIGDVEECFERPETVECVRRIRSLSEHNWRQYAADEVTEMKSHLLKYPLEVDSKGKVKPLSGCETFPDVGGKIKGTFTLLKVKENLTI. 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00391 865 Pfam Phospholipase D C terminal 783 853 IPR024632 -
Seca10g00391 865 SUPERFAMILY Phospholipase D/nuclease 205 468 - -
Seca10g00391 865 SUPERFAMILY Phospholipase D/nuclease 546 737 - -
Seca10g00391 865 Gene3D C2 domain 15 176 IPR035892 -
Seca10g00391 865 FunFam Phospholipase D delta 241 480 - -
Seca10g00391 865 Pfam Phospholipase D Active site motif 367 401 IPR001736 GO:0003824
Seca10g00391 865 Pfam Phospholipase D Active site motif 702 728 IPR001736 GO:0003824
Seca10g00391 865 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 38 189 IPR035892 -
Seca10g00391 865 Pfam C2 domain 40 166 IPR000008 -
Seca10g00391 865 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 701 728 IPR001736 GO:0003824
Seca10g00391 865 PIRSF PLD_plant 27 865 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Seca10g00391 865 Gene3D Endonuclease Chain A 238 484 - -
Seca10g00391 865 PANTHER PHOSPHOLIPASE D 32 852 IPR015679 -
Seca10g00391 865 Gene3D Endonuclease Chain A 512 754 - -
Seca10g00391 865 ProSiteProfiles C2 domain profile. 23 164 IPR000008 -
Seca10g00391 865 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 366 401 IPR001736 GO:0003824
Seca10g00391 865 SMART pld_4 701 728 IPR001736 GO:0003824
Seca10g00391 865 SMART pld_4 366 401 IPR001736 GO:0003824
Seca10g00391 865 FunFam Phospholipase D 514 747 - -
Seca10g00391 865 CDD C2_plant_PLD 35 187 - -
Seca10g00391 865 SMART C2_3c 41 163 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00391 Seca-Chr10 3427373 3432285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00391 32 865 Phospholipase D Gene Family (Wang group) AT2G42010 66.356 0.0 1230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00391 K01115 - gmx:100786241 1478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00391 10 3427373 3432285 Seca10g00391 10 3427373 3432285 ECH