Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00382 ATGAACATTTTCAGATCATTTGACGAGCTGAACTATAGCTACGGAGAGGCATCTTCTTCGTCGGAAACAAGTTCCTCCAATAACCGTAGAAGGTGTGCTACTCACTCAGATGAAGAAGTTATATTAGCGTCAGCGATGCCAAAGAAGCGAGCAGGGCGGAGAATATTCAAGGAAACGAGGCACCCAGTGTACCGAGGAGTGCGACGGAGGAACAAAAACAAGTGGGTTTGCGAGATGCGAATCCCTAACAACAACAAATCAAGGATTTGGCTCGGAACATACCCAACCCCTGAAATGGCTGCCAGGGCACATGATGTTGCCGCGCTGGCACTTCGAGGAAAATCTGCTTGTCTCAATTTCGCAGACTCGGCGTGGCGGTTGACGTTGCCGGCGTCAACCGATGCGGAGGAGATTAGGAGAGCAGCTGTGGAGGCTGCTGAATTGTGTGCGGCGGAGGACAACCAGCTGCAGCAGAGTGTGAAGGACATTACTGTTGATTATGAATTTTGTAGCGTTGAGGATCACATGGTCATGGAAGATACCAATAAGCCTATGCAACAACAGGGGATGTATGTGGAAGAAGCTCCGGCGGTGTCAGAATTTGAAAAATTGCTTTTGAGTATTGCTGATGAGCCTTTGTTGTCTCCTCCTCCTTGTGCAAGAAATGGTTGGGACTGGAATGACGTGGACATATTTGATGCTGAAGTGTCATTATGGAACTTTTCCATATGA 732 0.4809 MNIFRSFDELNYSYGEASSSSETSSSNNRRRCATHSDEEVILASAMPKKRAGRRIFKETRHPVYRGVRRRNKNKWVCEMRIPNNNKSRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLTLPASTDAEEIRRAAVEAAELCAAEDNQLQQSVKDITVDYEFCSVEDHMVMEDTNKPMQQQGMYVEEAPAVSEFEKLLLSIADEPLLSPPPCARNGWDWNDVDIFDAEVSLWNFSI. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00382 243 CDD AP2 64 123 IPR001471 GO:0003700|GO:0006355
Seca10g00382 243 Pfam AP2 domain 62 113 IPR001471 GO:0003700|GO:0006355
Seca10g00382 243 SUPERFAMILY DNA-binding domain 63 123 IPR016177 GO:0003677
Seca10g00382 243 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Seca10g00382 243 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Seca10g00382 243 SMART rav1_2 63 127 IPR001471 GO:0003700|GO:0006355
Seca10g00382 243 Gene3D AP2/ERF domain 63 122 IPR036955 GO:0003700|GO:0006355
Seca10g00382 243 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 18 240 IPR045277 GO:0003700
Seca10g00382 243 ProSiteProfiles AP2/ERF domain profile. 63 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00382 Seca-Chr10 3349462 3350193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00382 18 241 AP2-EREBP Transcription Factor Family AT4G25470 47.556 2.05e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca10g00382 AP2 2.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00382 - - gmx:100789097 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00382 10 3349462 3350193 Seca10g00382 10 3349462 3350193 ECH
Seca12g01770 12 19951240 19951953 Seca10g00382 10 3349462 3350193 PCT