Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00378 ATGGCCTCCTCACCATCTTCCAAGAGGCACCCACTGTATCATGGAATCCGAAGCCGCGGAGGAAAATGGGTGTCGGAAATCAGGGAGCCACGTAAGGCATCCCGCATATGGCTTGGGACATTCCCAACACCGGAGATGGCGGCTGCCGCCTTTGACGTGGCGGCGCTGGCATTGAAAGGTGACAATGCGGCTCTGAATCTCAACTTCCCTGACTTAATTGGAAAGTATGAAATGCCTGTAACTAACTCTCCTGCTGACATACGCAGTGCTGCCACTGCTGCAGCCTCACTGTTGAAAGGTGAACCTGAAGCGAGTCACCATGAAATGAATGCATCATCATCAATTAATGTAGAAGTAGGTAACTGCAGTGATAATAGTACTATGACTTCATGGTTTGAAAGTGATTTCATAGACGAGGAGGCGATATTCGGCATGCCAAGTTTGCTGGTGGACATGGCTAGGGGAATGCTTCTCTCACCTCCCAGAATGAGCCCACCACCGTCTGACAACTTGCCCGACAGGCAAGCTGGAGAAACTTTGTGGAGTTATTTTTAA 555 0.4973 MASSPSSKRHPLYHGIRSRGGKWVSEIREPRKASRIWLGTFPTPEMAAAAFDVAALALKGDNAALNLNFPDLIGKYEMPVTNSPADIRSAATAAASLLKGEPEASHHEMNASSSINVEVGNCSDNSTMTSWFESDFIDEEAIFGMPSLLVDMARGMLLSPPRMSPPPSDNLPDRQAGETLWSYF. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00378 184 CDD AP2 11 72 IPR001471 GO:0003700|GO:0006355
Seca10g00378 184 Gene3D AP2/ERF domain 12 71 IPR036955 GO:0003700|GO:0006355
Seca10g00378 184 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Seca10g00378 184 Pfam AP2 domain 13 60 IPR001471 GO:0003700|GO:0006355
Seca10g00378 184 SUPERFAMILY DNA-binding domain 12 68 IPR016177 GO:0003677
Seca10g00378 184 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Seca10g00378 184 MobiDBLite consensus disorder prediction 160 184 - -
Seca10g00378 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00378 Seca-Chr10 3327741 3328295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00378 7 183 AP2-EREBP Transcription Factor Family AT5G52020 50.549 1.13e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca10g00378 AP2 8.2e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00378 - - gmx:100811020 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00378 10 3327741 3328295 Seca10g00378 10 3327741 3328295 ECH
Seca12g01769 12 19858032 19858577 Seca10g00378 10 3327741 3328295 PCT