Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00368 ATGTTCTCCAGCACTGGCAAGTTCCACGAGTACATTAACCCATCCACCTCAACAAAGCAGTTCTTTGATCAGTATCAGATGACTGTAGGAACTGATCTGTGGAGCTCTCATTATGAGAAAATGCAAGAGACCTTGAAGAAATTGAAAGACGTGAACAAGAATCTTCACAAGGAGATTAGGCAGGGGATGGAGTATTGCCAGATACACAGAAGCTTGAACCAATTGTGGAGGGAGAAGTCCCTTGAGGAAGAAATGGACAAGGCCGACAAGGTTATCCGTGAGCGTAAGTATAAGGTGATAACCAATCAGATTTACATAGCTTTTGGTACGAAGCTTTCACATAACTTTTCTAGTAATGAAAATATACTTACTATTGGCACACAACATGCTCTTGACCCATTAACCTTGTTGAAAGCTCGGGTGAACAATTATGGCAGGGCAAGTGTTGTGATCAAGCATGATTGGAAACTAAGAACCCGTTTCTCTCTTGTTGGTGAGGTGGATACTAGAGCAATTAAAAAAAGTGGAATTGAGATGTACGTGTCACTTTGCAATGTTGTGATTGTTATGTATGTGAAATGTGGTAGCTTGGATTATGCACAAGAGCTGTTTGAAGAAATGATTGAGGAGGATGAGCTTAGTTATGGGTCAATTATTTCAGGGTACATGATTTATGCGCATGAGATGTTTGAAGAAACGCCAAAGAAGAATGTAGTTATTTCAATGTTATTTCCCTTTCTTTTAGTTGAGTTATTTTCTTGGTTTCAAGTTGATATTGGTTGA 783 0.3921 MFSSTGKFHEYINPSTSTKQFFDQYQMTVGTDLWSSHYEKMQETLKKLKDVNKNLHKEIRQGMEYCQIHRSLNQLWREKSLEEEMDKADKVIRERKYKVITNQIYIAFGTKLSHNFSSNENILTIGTQHALDPLTLLKARVNNYGRASVVIKHDWKLRTRFSLVGEVDTRAIKKSGIEMYVSLCNVVIVMYVKCGSLDYAQELFEEMIEEDELSYGSIISGYMIYAHEMFEETPKKNVVISMLFPFLLVELFSWFQVDIG. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00368 260 SUPERFAMILY SRF-like 1 49 IPR036879 GO:0003677|GO:0046983
Seca10g00368 260 Pfam Eukaryotic porin 106 171 IPR027246 GO:0005741|GO:0055085
Seca10g00368 260 ProSitePatterns Eukaryotic mitochondrial porin signature. 129 151 IPR001925 GO:0005741|GO:0008308|GO:0098656
Seca10g00368 260 Gene3D Porin 97 183 IPR023614 -
Seca10g00368 260 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 107 179 IPR001925 GO:0005741|GO:0008308|GO:0098656
Seca10g00368 260 Coils Coil 38 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00368 Seca-Chr10 3259047 3259994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00368 1 104 MADS-box Gene Family AT3G54340 45.192 1.83e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00368 K09264 - gmx:547720 154.451