Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00364 ATGTACAGGCAACCTGTTGCACACCCCACAAGCGGAGAGGCTCCGGCGACTTCAATGAGCGGCGAGGAGAGAGAAATCAGTGCGTACCAAGCTCTGGTGGATCGGTGTCGGAGCCTGGAGGAGAAACAAGCCAAGCTGAGGGAACAGTTCGATGAGCTGATGCAGGAGAAGAAGCTCTCAGTCAGGGATCATCAAGAGCAGCTGATCGCAGATTCAACCGCTGGTTTTCTTTCCGGATTCTTCTTCTCTGGAAGTCCCTATGCAACAGTCTTGAAATGCATGGGCCACGCCGTTTATGTCCATACAGTTTCCTCCGGCGAGATCATATACTGGAATCATGCGGCAGAAACTCTGTATGGATGGAAGGACTATGAAATCATTGGACAAAGAGTAACTCAGTTCCTAATTGCTGAGGAATATTATGCATCTCTGCAAAAGATTCTAGAAAGGTTGACCGCAGGAGTGCCATGGTCTGGGCAATTTCCTTTCAAGAAGAGGTCTGGTGAAGTATTTATGGCAATGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGATTGTTGGTGTTATCACTGTTTCAAGTGATGCAGCTGTATTTAACTCTCTAGATTCAGGAAATCAAAGAACTTACCAATCTGGTGCCAATGGTCAACCTGGAGTACGGAGGTTAAACTTAAAAAGGATTCAGTGGCCTCCACGGCCGTTGATTGCACCAATGCCACAGATTACTTCATCTGTTTCCAATCTGGCATCAAAGTTTCTCCCGCTCCGGCATACAGATGACACAGTTTCCAGGAATACATCAACATGTGAAGATGATGACAAACTAGAGAAGCGTGGCATATGTGAAATGAAACCTCATTCTAGACATCACCATAAGGAAAACACAACTGGCAGGGAGGCCTCTCTGAAGGATGAGTCTACTCCTGAATTCGGCCAACCTTCTAAAATTGCAGCTAAAGCTCTTGCTAAGCTTCAAATTGGGGGAGGTGGAAAATGTGGGAAGGATACTGGCAGAATTAAAAATAATTGCACAACTGATAATGACTCATCTGGAGGTTCAGTGGCATTAACTACACACCAGGATGTTGCTAATGGAGTGGATAAAGAAGGAAATCTCCATAAATGTGATTCTTTATTTGTTACAAAGAGAGCAGATGCTAAAGTTTGTGCAGATAGAACTTCTAGTGCTTTCAAAGTTAGTTCTTCTAAGCCTTTCTCAGGGGAGTGTTATGAGTGTTTTGGTTCTGCTGTTCCCCAAGACCCATTGCTAAGATTACACTGTCAATTCAATCCAAAGAAATTGGAGCCAGAAGCTACAAGTATGGTGATAAAAGATGAAGTGCAAAAGCAGCAAGAAGGGTTGCAATTGCCAAGTTCGAGGGAAAGTATAGGCAGCCATGAGAGTTCATCAAGCAAGGGGGATAATGAGTCAAACTCCGTTGTACAGTGTGAAATCCATTGGGAAGACCTTCAATTAAGAGAAGAGATTGGACAGGGTTCTTATGCTGCTGTTTATCATGGTATTTGGAATGGATCGGATGTTGCCATCAAGGTTTACTTTGGGAATGGATACACAGAGGAGACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTATTGCTTTTCATGGGAGCAGTATATTCACAGGAGAGGCTTGCCATTGTGACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAACTCTTCACAATGACAATCAGACATTAGACATCAGAAGGCGTCTAAGGATGGCTCTTGATGTTGCTAAAGGAATGAATTATCTTCATCACAGAAATCCGCCAATCGTGCATAGAGACCTAAAGTCTTCTAACCTACTTGTTGATAAAAACTGGACTGTCAAGGTTGGAGACTTTGGCTTGTCAAGGTTGAAGGATGCAACTTTGTTGACTACCAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAGATCCTTCGCAATGAACCTTCAAATGAAAAGTCTGATGTGTTCAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCCTGGAAAAATTTGAATTCCTTACAGGTTTCTCTCTCCCTCTCTGTGACACACAACAGATACTTGTCTGTGCTTTCTAGTCAACTGCAGAGAGTTCAAGCTAATAATGCTACTCATGTATACTTTCACTTTCACAAGCATCACCTCGCATCATTTTGA 2220 0.432 MYRQPVAHPTSGEAPATSMSGEEREISAYQALVDRCRSLEEKQAKLREQFDELMQEKKLSVRDHQEQLIADSTAGFLSGFFFSGSPYATVLKCMGHAVYVHTVSSGEIIYWNHAAETLYGWKDYEIIGQRVTQFLIAEEYYASLQKILERLTAGVPWSGQFPFKKRSGEVFMAMVTKTPLYEDGEIVGVITVSSDAAVFNSLDSGNQRTYQSGANGQPGVRRLNLKRIQWPPRPLIAPMPQITSSVSNLASKFLPLRHTDDTVSRNTSTCEDDDKLEKRGICEMKPHSRHHHKENTTGREASLKDESTPEFGQPSKIAAKALAKLQIGGGGKCGKDTGRIKNNCTTDNDSSGGSVALTTHQDVANGVDKEGNLHKCDSLFVTKRADAKVCADRTSSAFKVSSSKPFSGECYECFGSAVPQDPLLRLHCQFNPKKLEPEATSMVIKDEVQKQQEGLQLPSSRESIGSHESSSSKGDNESNSVVQCEIHWEDLQLREEIGQGSYAAVYHGIWNGSDVAIKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKTLHNDNQTLDIRRRLRMALDVAKGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLTTKSGRGTPQWMAPEILRNEPSNEKSDVFSFGVILWELMTQSIPWKNLNSLQVSLSLSVTHNRYLSVLSSQLQRVQANNATHVYFHFHKHHLASF. 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00364 739 Coils Coil 29 59 - -
Seca10g00364 739 ProSitePatterns Protein kinases ATP-binding region signature. 497 518 IPR017441 GO:0005524
Seca10g00364 739 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 212 697 - -
Seca10g00364 739 SMART serkin_6 491 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00364 739 MobiDBLite consensus disorder prediction 452 479 - -
Seca10g00364 739 ProSiteProfiles Protein kinase domain profile. 491 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00364 739 Gene3D Transferase(Phosphotransferase) domain 1 569 733 - -
Seca10g00364 739 CDD PAS 106 195 IPR000014 -
Seca10g00364 739 ProSiteProfiles PAS repeat profile. 105 155 IPR000014 -
Seca10g00364 739 MobiDBLite consensus disorder prediction 449 479 - -
Seca10g00364 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Seca10g00364 739 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 195 IPR035965 -
Seca10g00364 739 Pfam Protein tyrosine and serine/threonine kinase 491 699 IPR001245 GO:0004672|GO:0006468
Seca10g00364 739 Gene3D Phosphorylase Kinase; domain 1 484 568 - -
Seca10g00364 739 Pfam PAS domain 102 195 IPR000014 -
Seca10g00364 739 Gene3D PAS domain 96 198 - -
Seca10g00364 739 MobiDBLite consensus disorder prediction 285 306 - -
Seca10g00364 739 MobiDBLite consensus disorder prediction 285 311 - -
Seca10g00364 739 FunFam Serine/threonine-protein kinase isoform 1 482 569 - -
Seca10g00364 739 NCBIfam PAS domain S-box protein 100 195 IPR000014 -
Seca10g00364 739 SMART pas_2 85 153 IPR000014 -
Seca10g00364 739 CDD STKc_MAP3K-like 497 699 - -
Seca10g00364 739 MobiDBLite consensus disorder prediction 1 22 - -
Seca10g00364 739 SUPERFAMILY Protein kinase-like (PK-like) 472 709 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00364 Seca-Chr10 3208456 3216010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00364 19 697 MAP Kinase Kinase Kinase AT4G23050 43.889 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Seca10g00364 PK_Tyr_Ser-Thr 2.1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00364 - - gmx:100813707 1066.6