Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00363 ATGTACTTGCTTTGCAGGCTATGTATAATCTTCCTGGGTTTTGATGTTTTCTTTGTTGTTTTCTGTGTTGCACTAGCGTGTATCATTGGTATCGCCGTTTGCTGTTGTCTTCCGTGTATCATTGCACTTCTTTATGCAGTTGCAGATCAGGAAGGGGCATCAAAGGAAGACATTGAGCAATTGTCAAAATTCAAATTCCGAAGAGTTGAAAGTAATGAGAAACCTACTGGTAATGCACAAGGACCTGTTGGAGGAATAATGACTGAATGCCAGGCGGATTCACCTATTGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGACGATGGGGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGTATATTAATGCTACATGCCCCCTCTGCAAGTATAACATCTTGAAAAGTAGCAACCTCGGTCAAGAGGAAGTGTAG 489 0.4233 MYLLCRLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRVESNEKPTGNAQGPVGGIMTECQADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNLGQEEV. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00363 162 PANTHER TARGET OF ERK KINASE MPK-1 7 153 - -
Seca10g00363 162 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Seca10g00363 162 ProSiteProfiles Zinc finger RING-type profile. 107 148 IPR001841 -
Seca10g00363 162 SMART ring_2 107 147 IPR001841 -
Seca10g00363 162 Pfam Ring finger domain 106 148 IPR001841 -
Seca10g00363 162 SUPERFAMILY RING/U-box 97 154 - -
Seca10g00363 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 160 IPR013083 -
Seca10g00363 162 FunFam E3 ubiquitin-protein ligase At1g12760 93 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00363 Seca-Chr10 3198404 3201332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00363 4 155 C3H Transcription Factor Family AT1G68070 59.355 7.05e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00363 - - gmx:100800429 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01755 12 19531878 19535949 Seca10g00363 10 3198404 3201332 PCT