Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00361 ATGGCGCCATTACCGGCGGAGCAGAGCGGTGAATCAGCGCTAACAGACTCGCAGAGATCCATTCCGACGCCGTTTTTGACAAAGACATACCAGCTCGTGGATGATCCCTCGGCAGATGACCTAATTTCGTGGAACGAAGATGGCACAAGCTTCATAGTTTGGCGACCCGCTGAATTCGCTCGAGATTTGCTTCCCAAGTACTTCAAGCACAACAACTTCTCTAGTTTCGTCCGTCAGCTTAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGATTGTTTCCGGCGTGGCGAGAGAGGCCTGCTTCGCGACATACAGCGCCGGAAAATATCGACGTCGGCGACGGCAGCAGGAGCGGGTGGGGGAGCAACGACGGCCAATACGGTGACGGTGGCGGTGGCGGCACAACCAGGCATAGCGGTGTCCCCAACAACTTCCGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGGTAATACAGTGCACCGCACCACAAGTTGCACCACTGCGCCCGAGCTCTTAGAAGAGAATGAAAAGCTTAGGAAAGAGAACATGCAACTGAGTCACGAGTTGAGTCAATTGAAGGGTCTGTGTAATAACATAATCGCCTTGATGTCCAATTATGCTTCTGGTTTTAGCCGCCAACTAGAATCGTCTACTAGTGCTGCCACTGCCACTGCGAGGGCCGTGCCTGTGGTACCTGAAGGGAAAGCGTTGGAGCTTTTGCCTGCAAATGCGAAGCATGTTTCATTGGCTGAGGACGCTATGCATGTGAGTGACGCTGCCGGTGCCGCCACACCGTGCGAGACAGCGAATGCGGCGGAAGCAGAGGTTCCCAAACTGTTTGGGGTTTCAATTGGGCTGAAACGATGTAGGAGAGAGAGCGAGGAGAGAGAGGAACAGAATCAGACGCAAACACAATCCTCGCAGGAACCAGATCGCGGATCTGATTTGAAATCTGAACCGTTTGATGGCGATGACTCGGATGATCAGGAGCCTCGTTGGCTGGAACTTGGGAAATCATAA 1050 0.5305 MAPLPAEQSGESALTDSQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERGLLRDIQRRKISTSATAAGAGGGATTANTVTVAVAAQPGIAVSPTTSGDEQVLSSNSSPIGNTVHRTTSCTTAPELLEENEKLRKENMQLSHELSQLKGLCNNIIALMSNYASGFSRQLESSTSAATATARAVPVVPEGKALELLPANAKHVSLAEDAMHVSDAAGAATPCETANAAEAEVPKLFGVSIGLKRCRRESEEREEQNQTQTQSSQEPDRGSDLKSEPFDGDDSDDQEPRWLELGKS. 350
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00361 349 MobiDBLite consensus disorder prediction 149 171 - -
Seca10g00361 349 MobiDBLite consensus disorder prediction 300 349 - -
Seca10g00361 349 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca10g00361 349 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Seca10g00361 349 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca10g00361 349 Coils Coil 178 205 - -
Seca10g00361 349 FunFam Heat stress transcription factor B-4 17 115 - -
Seca10g00361 349 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca10g00361 349 Gene3D - 17 115 IPR036388 -
Seca10g00361 349 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca10g00361 349 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca10g00361 349 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca10g00361 349 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 322 IPR027725 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca10g00361 Seca-Chr10 3186797 3189335 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00361 16 348 HSF AT4G11660 53.009 3.74e-104 309
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca10g00361 HSF_DNA-bind 2.4e-32 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00361 K09419 - gmx:100791020 485.723