LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g00361	ATGGCGCCATTACCGGCGGAGCAGAGCGGTGAATCAGCGCTAACAGACTCGCAGAGATCCATTCCGACGCCGTTTTTGACAAAGACATACCAGCTCGTGGATGATCCCTCGGCAGATGACCTAATTTCGTGGAACGAAGATGGCACAAGCTTCATAGTTTGGCGACCCGCTGAATTCGCTCGAGATTTGCTTCCCAAGTACTTCAAGCACAACAACTTCTCTAGTTTCGTCCGTCAGCTTAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGATTGTTTCCGGCGTGGCGAGAGAGGCCTGCTTCGCGACATACAGCGCCGGAAAATATCGACGTCGGCGACGGCAGCAGGAGCGGGTGGGGGAGCAACGACGGCCAATACGGTGACGGTGGCGGTGGCGGCACAACCAGGCATAGCGGTGTCCCCAACAACTTCCGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGGTAATACAGTGCACCGCACCACAAGTTGCACCACTGCGCCCGAGCTCTTAGAAGAGAATGAAAAGCTTAGGAAAGAGAACATGCAACTGAGTCACGAGTTGAGTCAATTGAAGGGTCTGTGTAATAACATAATCGCCTTGATGTCCAATTATGCTTCTGGTTTTAGCCGCCAACTAGAATCGTCTACTAGTGCTGCCACTGCCACTGCGAGGGCCGTGCCTGTGGTACCTGAAGGGAAAGCGTTGGAGCTTTTGCCTGCAAATGCGAAGCATGTTTCATTGGCTGAGGACGCTATGCATGTGAGTGACGCTGCCGGTGCCGCCACACCGTGCGAGACAGCGAATGCGGCGGAAGCAGAGGTTCCCAAACTGTTTGGGGTTTCAATTGGGCTGAAACGATGTAGGAGAGAGAGCGAGGAGAGAGAGGAACAGAATCAGACGCAAACACAATCCTCGCAGGAACCAGATCGCGGATCTGATTTGAAATCTGAACCGTTTGATGGCGATGACTCGGATGATCAGGAGCCTCGTTGGCTGGAACTTGGGAAATCATAA	1050	0.5305	MAPLPAEQSGESALTDSQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERGLLRDIQRRKISTSATAAGAGGGATTANTVTVAVAAQPGIAVSPTTSGDEQVLSSNSSPIGNTVHRTTSCTTAPELLEENEKLRKENMQLSHELSQLKGLCNNIIALMSNYASGFSRQLESSTSAATATARAVPVVPEGKALELLPANAKHVSLAEDAMHVSDAAGAATPCETANAAEAEVPKLFGVSIGLKRCRRESEEREEQNQTQTQSSQEPDRGSDLKSEPFDGDDSDDQEPRWLELGKS.	350

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g00361	349	MobiDBLite	consensus disorder prediction	149	171	-	-
	Seca10g00361	349	MobiDBLite	consensus disorder prediction	300	349	-	-
	Seca10g00361	349	ProSitePatterns	HSF-type DNA-binding domain signature.	64	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca10g00361	349	SUPERFAMILY	"Winged helix" DNA-binding domain	22	114	IPR036390	-
	Seca10g00361	349	Pfam	HSF-type DNA-binding	25	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca10g00361	349	Coils	Coil	178	205	-	-
	Seca10g00361	349	FunFam	Heat stress transcription factor B-4	17	115	-	-
	Seca10g00361	349	SMART	hsfneu3	21	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca10g00361	349	Gene3D	-	17	115	IPR036388	-
	Seca10g00361	349	PRINTS	Heat shock factor (HSF) domain signature	25	48	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca10g00361	349	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca10g00361	349	PRINTS	Heat shock factor (HSF) domain signature	76	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca10g00361	349	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	16	322	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g00361	Seca-Chr10	3186797	3189335	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g00361	16	348	HSF	AT4G11660	53.009	3.74e-104	309

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Seca10g00361		HSF_DNA-bind	2.4e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g00361	K09419		-	gmx:100791020	485.723