Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00360 ATGTTGGAGGTTAAAATGGAGCTCAAGGATTTCGAATTTGATTCACCTCATAGAGATATGCTCCATTTATGTCTTTCTTCGCCCAATTGCAATAATGGCACCTCCCTTCTGGAATCAACCCCTGTTCCTATTACAGGGATAATTAAAGCCCAAGCTAAATGCTCGACAAAGCGATGCTGGACAGAGGAAGAGGACAACATCTTGATTGAGTCAGTCAAGAAGCACGACGGAAGGAGCTGGAAGAAAATAGCTGAACACCTCCCTGGGCGAACCGACGTTCAATGCTTGCATCGCTGGCAAAAGGTTTTGAATCCTGATCTAGTAAAGGGATCATGGACAAAGGAGGAGGATGGTTGCCTAATTGAACTAGTAAGGAAGTATGGTTTCAAGAGATGGTCATTTATTGCAAAATTCTTACCAGGTCGTATTGGGAAGCAATGCCGAGAAAGGTGGCACAATCACCTTGATCCAGCTATAAAGAAGGATGCATGGACTGATGAGGAGGAATCAATACTTGCTTGTTATCACCAAATATACGGCAGTAGGTGGGCAGAAATTGCAAGGTTTCTTCCTGGAAGGACTGACAATGCTATAAAAAATCACTGGAACTGCTCAATGAAGAAGAAATTGTGTGCATCACCTTTTGGTTGTGACATAAATGTTGCCACTTCCAGTTCCTGCTCTTCTGGAATATTTAATGGAATGGATTCTCTCAAGCAGAATCACTGGTTGATGCACAGTGTTGATAACTTTCCCACAAAATTGTTTCTTCAAAATGCTTCTGGAGTGGAATTTTGCTCTGAAAAAAGCTGTTTTGAGCGGGGAACTCCTAGGGCCTCAAGTAAAGGTGAAAGCAGATCAGTTAATTTACCAAATGAGGCATGTGCCATTACATGTTGCAGAGACTATGCCGACACAATTAAACCTACAGGCTCGTTATTGGATAATTCTCTGGATATGCTTGCTACAGATTTGGATTGTTTGCCTCTTGCAAGTACTGCTACTTATGAGGCATATAAATCTCCCAAACGGCAAAAGCTTTCTTCCTCTGATGCAAAGTTTATTGTGGGTGATGAATGGGATAGTCCTTATGTGAACTACTTAAAATCGGCTAATTGTGAGAAGAAAGGTCAAGTTGTAAAGGGAAGCAACAAAATCAACAGTACGCCAGATAATGATGCAGACAACACAAATGACGTATATGATTGCGATCCTGTTGAACGCTCCCCAGTGGAAGACTTGGTGTACCCAATAGAATTTAATGAATATCTAAGTCCGAAAACACACATCGGATGCGCGGACAATAAAGGTTGTCGTTATGTTCCTCCAGCATCTACACTGAGGAATTGCCTGGACAGCATCAGCCCAGAATCTGTACTAAGAAGCTTAGCAATGACCTATGAGAATGTTCCTTCTATTATTAGGAAAAGAACTCCCAGGAAAGCATGCAGTGCTGACTATTGTGACAGTGCCCAAACACCTTCGAGAATGATCATCTCTTCTCCTGAAGCAAAACCTTTAATTGGCTTGGATAATTTAAAACTGAACTAG 1551 0.4178 MLEVKMELKDFEFDSPHRDMLHLCLSSPNCNNGTSLLESTPVPITGIIKAQAKCSTKRCWTEEEDNILIESVKKHDGRSWKKIAEHLPGRTDVQCLHRWQKVLNPDLVKGSWTKEEDGCLIELVRKYGFKRWSFIAKFLPGRIGKQCRERWHNHLDPAIKKDAWTDEEESILACYHQIYGSRWAEIARFLPGRTDNAIKNHWNCSMKKKLCASPFGCDINVATSSSCSSGIFNGMDSLKQNHWLMHSVDNFPTKLFLQNASGVEFCSEKSCFERGTPRASSKGESRSVNLPNEACAITCCRDYADTIKPTGSLLDNSLDMLATDLDCLPLASTATYEAYKSPKRQKLSSSDAKFIVGDEWDSPYVNYLKSANCEKKGQVVKGSNKINSTPDNDADNTNDVYDCDPVERSPVEDLVYPIEFNEYLSPKTHIGCADNKGCRYVPPASTLRNCLDSISPESVLRSLAMTYENVPSIIRKRTPRKACSADYCDSAQTPSRMIISSPEAKPLIGLDNLKLN. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00360 516 CDD SANT 111 155 IPR001005 -
Seca10g00360 516 SUPERFAMILY Homeodomain-like 106 202 IPR009057 -
Seca10g00360 516 SMART sant 56 105 IPR001005 -
Seca10g00360 516 SMART sant 160 208 IPR001005 -
Seca10g00360 516 SMART sant 108 157 IPR001005 -
Seca10g00360 516 FunFam Transcriptional activator Myb isoform A 56 108 - -
Seca10g00360 516 CDD SANT 60 103 IPR001005 -
Seca10g00360 516 SUPERFAMILY Homeodomain-like 56 110 IPR009057 -
Seca10g00360 516 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 103 IPR017930 -
Seca10g00360 516 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 210 IPR017930 -
Seca10g00360 516 ProSiteProfiles Myb-like domain profile. 60 103 IPR001005 -
Seca10g00360 516 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 159 IPR017930 -
Seca10g00360 516 CDD SANT 163 203 IPR001005 -
Seca10g00360 516 FunFam Transcriptional activator Myb isoform A 109 161 - -
Seca10g00360 516 Gene3D - 56 108 - -
Seca10g00360 516 ProSiteProfiles Myb-like domain profile. 156 206 IPR001005 -
Seca10g00360 516 Gene3D - 109 160 - -
Seca10g00360 516 Pfam Myb-like DNA-binding domain 109 155 IPR001005 -
Seca10g00360 516 Pfam Myb-like DNA-binding domain 58 103 IPR001005 -
Seca10g00360 516 Pfam Myb-like DNA-binding domain 161 203 IPR001005 -
Seca10g00360 516 ProSiteProfiles Myb-like domain profile. 104 155 IPR001005 -
Seca10g00360 516 Gene3D - 163 210 - -
Seca10g00360 516 PANTHER MYB PROTEIN-RELATED 57 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00360 Seca-Chr10 3178990 3182974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00360 57 210 MYB Transcription Factor Family AT5G02320 70.130 2.59e-74 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g00360 Myb_DNA-binding 4.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00360 - - aprc:113869477 645.58