Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00346 ATGGCGAAGTTGTTAGCCTTAGCTTGTCTTCGAAATAAGGGATGGCATGAACTGTCGCCGCGACCTCACTACCCGTCCATGCCACGGTACCCCAAGGGCGGTGCCACCGTGGAGGAGGGTTCGGAGGTCAGTGCCTTTTTCTCCGTCCTCGGAATGAGTTGCGCCGCCTGCGCTGGATCCGTTGAGAAGGCCATCAAACGCCTCCCTGGGATTCTTGAAGCCTTCGTCGATGTCCTCAACAACCGTGCTCGAGTCCTCTTTTACCCTTCCTTCGTCAACGAGGAGGAAATTCGCGAGGCCATTGAAGATGCTGGATTTGAGGCCACGTTACTCACGGATGCGGTGAGTGAAAAATCTGTTCAAGTGTGCCGCTTACAAATCAGAGGAATGACTTGTACATCGTGTTCCTCCACCGTTGAATCTGCTCTGGTAGCCATCCACGGTGTTGTGAAAGCTAGAGTAGCGTTGGCAACCGAAGAAGCTGAAGTTCACTACAGTCCAAATGTTGTTAGCTATAACCAAATTTTGGAAGCTGTAGAAGATACTGGATTCGAAGCTGCACTTATCAGTTCGAGTGAAGATTTGAGCAAGATAGACCTCCTGGTGGAAGGTGATCTCTCTGATCATTCAATGAAACTGATTGAAGATTCTCTTCGGGGACTCCCAGGGGTTCTAGATGTAGACATACGCGTTGAATTGAAGAAAGTTTCACTTTCTTATAAACCAGACATGACAGGGCCCAGGAACTTGATCAATGTGATTGAGGAAACTGGGAATTTCAAGGCAAAATTATTTCCTGAAGAAGGAGGAAGAAGGGATGCTCATAGAAGGGAGGAAATTAAGCAATATTATAGATCTTTCTTGTGGAGTTTGGTGTTTACTGTTCCTGTTTTTCTAACCTCCATGGTGCTTATGTATGTCCCTGGAGTAAAGGATGTATTGGATGCCAAAGTCGTCAATATGCTTACCGTTGGGGAAATTGCAAGATGGGTACTTGCCACTCCAGTGCAATTCATTTTGGGTTGGCGATTTTACTCTGGTTCTTACAAAGCATTACGCCATGGCTCTGCTAATATGGATGTTCTGATTGCCTTGGGAACAAATGCTGCGTACTTTTATTCAGTATACTCTGTCCTGAGAGCTGCTACTTCTCCGCATTTTGAGGGTACTGATTTCTTTGAGACTAGTGCTATGCTCATTTCGTTCATTCTCCTTGGCAAGTATCTTGAGATTTTAGCTAAGGGGAAGACATCCAATGCAATTGCCAAGCTTATGAACTTGACCCCAGACACTGCTATATTGTTAAATCTGGATAGTGAAGGGAATGTTATTGGGGAGCAAGAAATTGATAGCCGATTGGTTCAAAAGAATGATGTGATTAAAGTTATTCCTGGTGCAAAAGTGGCTTCAGATGGGTTGGTTATATGGGGCCAGAGTCACGTGAATGAGAGCATGATCACAGGTGAGGCACGTCCTGTGGCGAAGAGGAAAGGCGACACTGTTATTGGAGGAACCGTGAATGAGAATGGAGTGCTGCATGTTAAGGCAACGCGGGTTGGATCAGAAAGTGCTCTTTCCCAGATTGTTCGACTTGTTGAGTCAGCACAGATGGCCAAGGCGCCTGTGCAAAAGTTTGCTGATCGCATTTCGAAATACTTTGTGCCTTTGGTGATCTTAATATCATTTACTACTTGGCTTGCCTGGTTTTTAGCAGGAAGATTTCATGCTTACCCAAAGTCTTGGATACCATCTTCCATGGACAGCTTTGAGCTTGCTTTGCAGTTTGGAATATCTGTCATGGTCATAGCCTGCCCTTGTGCTTTGGGTTTAGCAACACCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAGGGTGTACTGATCAAAGGAGGGCAAGCATTAGAAAGTGCACATAAGGTGAACTGCATTGTTTTTGACAAGACTGGAACTCTCACCGTTGGGAAACCTGTGATAGTAAATACAAAACTATTGACAAAAATGGTACTAAGGGAATTCTATGAACTTGTGGCTGCTACTGAGGTGAATAGTGAGCATCCACTGGCTAAGGCCATTGTCGAGTATGCCAAAAAATTCAGAGATGAAGAGAACCCTTCTTGGCCAGAAGCACAAGATTTTGTTTCCATTACTGGACACGGAGTAAAGGCCACTGTTCGTAACAAGGAAATAATTGTGGGTAACAAGAGCTTGTTGGCTGACCATAGCATTGAGATTCCCAGTATTGCTGAAGATATGCTTGCCGAAGCCGAAAAGATGGCTCAAACGGGAATTTTGGTATCTATAAATGGGGAAGTAGCTGCTGTTTTAGCAGTATCTGATCCATTGAAACCAGGTGCGCAAGAAGTCATTTCCATTCTCAAGTCTATGAAAATTAGAAGCATCATGGTGACCGGGGACAACCTTGGAACTGCCAATTCTATTGCGAGGGAAGTTGGAATTGAAGATGTTATGGCTGAGGCCAAACCTGAGCAGAAAGCAGAGAAAGTGAAAGAGTTGCAGGCTTTTGGGTACACGGTGAGTATGGTGGGGGATGGTATCAATGATTCACCTGCACTTGTGGCAGCCGATGTGGGAATGGCAATAGGTGCTGGTACAGACATTGCTATTGAAGCAGCTGATATTGTCCTCATGAAGAGCAACCTGGAGGATGTCATAACTGCCATTGACCTTTCGAGAAAAACATTTTCCCGTATACGCTTGAATTACTTTTGGGCTTTGGGTTACAATATGCTTGGCATCCCAATCGCTGCTGGAGCTCTTTTCCCTTCAACAGGGTTCCGATTGCCACCCTGGATTGCTGGGGCTGCTATGGCTGCCTCTTCTGTCAGCGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAGGAGACCCGGGAAGCTTGACAATCTTGACATACGGGGTATTAGAGTCGAGTGA 2940 0.4554 MAKLLALACLRNKGWHELSPRPHYPSMPRYPKGGATVEEGSEVSAFFSVLGMSCAACAGSVEKAIKRLPGILEAFVDVLNNRARVLFYPSFVNEEEIREAIEDAGFEATLLTDAVSEKSVQVCRLQIRGMTCTSCSSTVESALVAIHGVVKARVALATEEAEVHYSPNVVSYNQILEAVEDTGFEAALISSSEDLSKIDLLVEGDLSDHSMKLIEDSLRGLPGVLDVDIRVELKKVSLSYKPDMTGPRNLINVIEETGNFKAKLFPEEGGRRDAHRREEIKQYYRSFLWSLVFTVPVFLTSMVLMYVPGVKDVLDAKVVNMLTVGEIARWVLATPVQFILGWRFYSGSYKALRHGSANMDVLIALGTNAAYFYSVYSVLRAATSPHFEGTDFFETSAMLISFILLGKYLEILAKGKTSNAIAKLMNLTPDTAILLNLDSEGNVIGEQEIDSRLVQKNDVIKVIPGAKVASDGLVIWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHVKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVILISFTTWLAWFLAGRFHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVIVNTKLLTKMVLREFYELVAATEVNSEHPLAKAIVEYAKKFRDEENPSWPEAQDFVSITGHGVKATVRNKEIIVGNKSLLADHSIEIPSIAEDMLAEAEKMAQTGILVSINGEVAAVLAVSDPLKPGAQEVISILKSMKIRSIMVTGDNLGTANSIAREVGIEDVMAEAKPEQKAEKVKELQAFGYTVSMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYFWALGYNMLGIPIAAGALFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPGKLDNLDIRGIRVE. 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00346 979 SUPERFAMILY Calcium ATPase, transduction domain A 446 532 IPR008250 -
Seca10g00346 979 ProSiteProfiles Heavy-metal-associated domain profile. 196 262 IPR006121 GO:0046872
Seca10g00346 979 SUPERFAMILY HAD-like 645 956 IPR036412 -
Seca10g00346 979 ProSitePatterns E1-E2 ATPases phosphorylation site. 648 654 IPR018303 -
Seca10g00346 979 SUPERFAMILY HMA, heavy metal-associated domain 118 191 IPR036163 GO:0046872
Seca10g00346 979 Gene3D - 44 114 - -
Seca10g00346 979 CDD HMA 47 109 IPR006121 GO:0046872
Seca10g00346 979 SUPERFAMILY Calcium ATPase, transmembrane domain M 391 924 IPR023298 -
Seca10g00346 979 FunFam Probable copper-transporting ATPase HMA5 759 907 - -
Seca10g00346 979 NCBIfam HAD-IC family P-type ATPase 399 933 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca10g00346 979 PRINTS P-type cation-transporting ATPase superfamily signature 646 660 - -
Seca10g00346 979 PRINTS P-type cation-transporting ATPase superfamily signature 482 496 - -
Seca10g00346 979 PRINTS P-type cation-transporting ATPase superfamily signature 797 807 - -
Seca10g00346 979 PRINTS P-type cation-transporting ATPase superfamily signature 775 786 - -
Seca10g00346 979 PRINTS P-type cation-transporting ATPase superfamily signature 873 885 - -
Seca10g00346 979 PRINTS P-type cation-transporting ATPase superfamily signature 850 869 - -
Seca10g00346 979 FunFam Copper-transporting ATPase HMA5 120 191 - -
Seca10g00346 979 Pfam haloacid dehalogenase-like hydrolase 642 864 - -
Seca10g00346 979 ProSitePatterns Heavy-metal-associated domain. 49 78 IPR017969 GO:0046872
Seca10g00346 979 PRINTS Copper-transporting ATPase 1 signature 70 93 - -
Seca10g00346 979 PRINTS Copper-transporting ATPase 1 signature 44 69 - -
Seca10g00346 979 PRINTS Copper-transporting ATPase 1 signature 145 166 - -
Seca10g00346 979 PRINTS Copper-transporting ATPase 1 signature 99 119 - -
Seca10g00346 979 NCBIfam copper ion binding protein 125 186 IPR006122 GO:0005507
Seca10g00346 979 NCBIfam copper ion binding protein 47 108 IPR006122 GO:0005507
Seca10g00346 979 SUPERFAMILY HMA, heavy metal-associated domain 42 111 IPR036163 GO:0046872
Seca10g00346 979 CDD HMA 125 187 IPR006121 GO:0046872
Seca10g00346 979 Gene3D - 196 267 - -
Seca10g00346 979 SUPERFAMILY HMA, heavy metal-associated domain 192 258 IPR036163 GO:0046872
Seca10g00346 979 ProSiteProfiles Heavy-metal-associated domain profile. 43 109 IPR006121 GO:0046872
Seca10g00346 979 FunFam Copper-transporting ATPase 1, putative 414 536 - -
Seca10g00346 979 Pfam E1-E2 ATPase 445 624 - -
Seca10g00346 979 SFLD p-type atpase 628 902 IPR044492 -
Seca10g00346 979 CDD P-type_ATPase_Cu-like 285 960 - -
Seca10g00346 979 FunFam Copper-transporting ATPase HMA5 42 113 - -
Seca10g00346 979 NCBIfam heavy metal translocating P-type ATPase 359 959 IPR027256 GO:0006812|GO:0016020|GO:0019829
Seca10g00346 979 Gene3D - 731 781 IPR023299 GO:0000166
Seca10g00346 979 Gene3D - 653 730 IPR023299 GO:0000166
Seca10g00346 979 Pfam Heavy-metal-associated domain 125 185 IPR006121 GO:0046872
Seca10g00346 979 Pfam Heavy-metal-associated domain 47 107 IPR006121 GO:0046872
Seca10g00346 979 ProSiteProfiles Heavy-metal-associated domain profile. 121 187 IPR006121 GO:0046872
Seca10g00346 979 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 3 975 - -
Seca10g00346 979 SFLD Haloacid Dehalogenase 628 902 - -
Seca10g00346 979 ProSitePatterns Heavy-metal-associated domain. 127 156 IPR017969 GO:0046872
Seca10g00346 979 Gene3D - 121 193 - -
Seca10g00346 979 Gene3D - 613 907 IPR023214 -
Seca10g00346 979 Gene3D - 414 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00346 Seca-Chr10 3043598 3048136 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00346 3 979 Primary Pumps ATPases AT1G63440 75.556 0.0 1528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00346 K17686 - gmx:100816893 1629.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00346 10 3043598 3048136 Seca10g00346 10 3043598 3048136 ECH