Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00344 ATGGAAGAAGATTCCAATGACACGTCATCTCAAATATGTCGAATACACATAGGGGGCATGACATGTACTTCTTGCTCCTCCACCGTCGAATCAGTTCTGCAAAGACTTCGTGGGGTCCACAAAGCACGAGTGGCCTTGGCCACCGAAGAAGCAGAAGTCCGTTACGACCCTAAGATTGTCAGTTACAATCAGTTAATGGAAGCTATAGAAGAGGCTGGGTTTGAAGCCGTACTAATAAGCAAAGGGGAACACATAAGCAAGATAGAGCTTAAAGTTGATGGCATTAAAAACGAGCAATCCATGAGTGCCATTGAAAAATCTCTCCAGGAACTCCCTGGTGTTGAAACCATAGAAATTTATCCTGACATTCACAAAGTTGTCGTCACTTATAAGCCATATATGACAGGGCCTAGAACCTTCATCCAAGTCATAGAATCTTCTGGATCTGGTTGTTTTAGAGCGGTTATATTTCCCAATGATGGAGGAAGAGAAGCACATAAACAGGGCGAAATTGACCGATACTTCAAATTATTCAAGTGGAGTTTGGCTTTCACCATTCCTGTTTTTCTAACATCCATGGTCCTTATGTATATACCTGGAATTAAACATGTTTTAGATATCAAAGTTGTTAATATGTTGAACATTGGACTGCTCTTGAGGTTGGAATTTGCTACTCCAGTACAGTTTATCATTGGCAGGAGATTCTACATTGGGTCCTATAAAGCTCTACGCAAAGGTTCTGCTAACATGGATGTTTTGATAGCCTTGGGAACAAATGCAGCATATTTCTATTCTGTCTATATTGCTGGAAGAGCTGCTTTTTCAAGGCATTTCAAAGGCCATGATTTTTTTGAGACCAGTTCTATGCTTATTTCATTTATTTTACTTGGAAAGTATTTGGAAGTGTTGGCAAAGGGTAAGACATCACAGGCAATTGCTAAGCTTATGGACTTGACCCCTGATACAGCTACCTTATTAACTCAAGATGATGAACAAATTGATAGCCGGTTGATACAAAAGAATGATGTGATCAAAATTGTTCCGGGTGCAAAAGTAGCATCAGATGGTTTTGTTATTTGGGGACAAAGTCACATAAATGAAAGCATGATAACTGGTGAAGCAAGGCCTGTGGCGAAGAGGAAGGGTGATATGGTGATTGGAGGCACTGTGAATGAGAATGGGGTTTTGCATGTTAAGGTAACAAGGGTTGGATCAGAGAGTGCCCTTTCCCAGATTGTTCGACTTGTTGAGTCTGCCCAAATGGCTAAAGCTCCTGTCCAGAAACTTGCAGACCAAATTTCTAAATATTTTGTTCCACTAGTCATTGTGCTTTCTCTTTCAACATTTCTTTCTTGGTTTGTAGCTGGAAAGTTACATGCATTCCCAAAATCTTGGATACCATCCTCCATGAATAGCTTTGAGCTTGCACTTCAGTTTGGAATTTCACTGATGGTCATAGCCTGCCCTTGTGCTCTTGGCCTAGCCACTCCTACAGCTGTCATGGTTGGTACTGGTGTTGGTGCAACTCAAGGTGTGTTGATCAAAGGGGGGCAAGCATTAGAAAGTGCACACAAGGTGAATTGTATAGTGTTTGATAAGACAGGGACTCTCACAGTTGGGAAGCCTGTGGTTGTGACTACAAAACTCTTAAAAAATATGTCACTTAAAGATTTCTATGAATTTGTGAATAGTGAACATCCAATAGCCAAGGCCATTGTTGAGTATGCCAAGAATATCATAGAAGATGAACAGAATCATCCCTTGCCAGAAGCAAAGGACTTTGTTTCTGTTTCAGGACATGGAGTCAAGGCAATTGTTCGAAACAAGGAAATAATGATTGGGAATAAAAAATTGATGCTGGATCACAACATAGCCATTTCAGTGGATGCTGAAGAAATACTAGCAGAAGCTGAAAGCCTGGCTCAAACAGGGATTTTGGTATCCCTAGATGGAGAAGTGGCAGGAATTTTGGCTGTATCTGACCCATTGAAACCTAATGCCAAAGAAATTATTTCTATTCTTAACTCCATGAAAATCAGGAGCATCATGGTGACAGGTGATAACTGGGGAACAGCCAATTCCATAGCCAGACAAGCTGGCATTGAAACTGTAATGGCAGAGGCTCAACCTGAGACTAAAGCTACTAAAGTAAAAGAATTGCAGACTATGGGGTACATTGTGGCAATGGTGGGAGATGGCATCAATGACTCACCAGCACTGGTGGCAGCTGATGTTGGAATGGCAATTGGTGCTGGGACAGACATAGCTATTGAGGCAGCTGACATTGTTCTCATGAAGAGCAACTTGGAGGATATAATAACTGCCATTGACCTTGCAAAGAAAACTTTCTCCCGTATACGTCTAAACTACGTTTGGGCTTTGGGTTACAATCTTCTAGCCATCCCAATTGCTGCGGGCGTCCTTTACCCTTCCACTAAATTTCGACTACCACCATGGATTGCTGGAGCTGCAATGGCTGCCTCTTCTGTTAGTGTTGTTTGCTCCTCCCTCTTGTTAAAGTATTACAAGAGACCAAAGAAGCTAAACAACTTGGAGATAAACGGTACTCGTCCCTCCTTTGAAATCCCAACAACTTCCATAAACAAGAATAGTTCTATTACTCCTCAAATTGAGGGTAATGAAACTGAGCCTGCTAAATTTCCAGGAATCCCATATGTGGCCACTAGTAGAGTAGGTAACAATGATAGAGATGAGGAGGTTGCAAATGCAGTTAAGGTCATTGAGGAACAATTGCAGGTTCATCGATCCTGGAAATCAGATAAAAACTATGCAACTTGTGATGGTCAAGGAATATATGTGTATGATTTGCCATCCAAGTTTAACAAGGACTTGGTGGGTCAATGCCATGACATGGTTCCATGGCAGGATTTCTGCAAATACATCAGTAATGAGGGGTTTGGTGAGCCAATAACAAAGCTTGGCAGAGGATGGTATCAAACTCATCAGTACTCACTTGAACTCATATTTCATTCCAGGGTGTTGAAGCATCCATGCAGGGTTTATAGTGAAAATGATGCAAAGCTCTTCTATGTTCCATTCTATGGTGGTTTGGATATCTTGAGGTGGCATTTCAAGAATGTTTCAAATGATGTGAAGGACAGTTTGGGTTTGGAATTGGTGAAGTGGCTTGAGAGACAAAGGCCATGGAACAGGAATTCAGGTAAGGATCATGTATTTGTGTTGGGTAAAATTTCATGGGATTTTAGGAGAACTAGTGAGTCTCCATGGGGTACTAGATTGTTAGAGCTTGACAAAATGCAAAACCCCATGAAGCTCTTGATTGAACGCCAACCATGGCATGTGAATGACATTGGAATTCCACATCCAACTTATTTCCACCCACATTCAGACAATGATATAATCGCTTGGCAACTGAAAATCATGAGATCAAATCGCAAGAACCTTGTCAGCTTCGCTGGAGCAGCACGAGCTGAAGCAGAGGACAACATAAGGTCAATATTAATAGAGCAATGCAGTTCTGGTAAATGCAAATTTCTGAATTGCAGTTCTGTCAAGTGTGGTGAGTCAGAGTCAATTATTGAACTATTTGTGGAGTCTGAGTTCTGCCTGCAGCCCCCAGGGGATAGTCCAACAAGAAAATCTGTTTTTGATTCCCTCATATCAGGTTGCATCCCAGTTCTTTTTGATCCTTTCACAGCTTACTACCAATATCCCTGGCATTTACCCGAGGATCATGACAAGTACTCTGTGTTTATGGACAAAAAAGAGGTGAGACAAATGAATGTCAATGTGGTGGAGAGGCTAGCCAATATTTCATCAAGAGAGAGGGAAAACATGAGGAGGTATATTATATATGAATTATTGCCTGGATTAGTGTATGGGGATCACAACGCTGAGCTTGAGAAGTTTCAGGATGCATTTGCCATTACAATGAATAATCTGCTTGAGAGGGTTAGCAGATTAGATGAACCACACAAGGCTTGA 3966 0.4145 MEEDSNDTSSQICRIHIGGMTCTSCSSTVESVLQRLRGVHKARVALATEEAEVRYDPKIVSYNQLMEAIEEAGFEAVLISKGEHISKIELKVDGIKNEQSMSAIEKSLQELPGVETIEIYPDIHKVVVTYKPYMTGPRTFIQVIESSGSGCFRAVIFPNDGGREAHKQGEIDRYFKLFKWSLAFTIPVFLTSMVLMYIPGIKHVLDIKVVNMLNIGLLLRLEFATPVQFIIGRRFYIGSYKALRKGSANMDVLIALGTNAAYFYSVYIAGRAAFSRHFKGHDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMDLTPDTATLLTQDDEQIDSRLIQKNDVIKIVPGAKVASDGFVIWGQSHINESMITGEARPVAKRKGDMVIGGTVNENGVLHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADQISKYFVPLVIVLSLSTFLSWFVAGKLHAFPKSWIPSSMNSFELALQFGISLMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVTTKLLKNMSLKDFYEFVNSEHPIAKAIVEYAKNIIEDEQNHPLPEAKDFVSVSGHGVKAIVRNKEIMIGNKKLMLDHNIAISVDAEEILAEAESLAQTGILVSLDGEVAGILAVSDPLKPNAKEIISILNSMKIRSIMVTGDNWGTANSIARQAGIETVMAEAQPETKATKVKELQTMGYIVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIITAIDLAKKTFSRIRLNYVWALGYNLLAIPIAAGVLYPSTKFRLPPWIAGAAMAASSVSVVCSSLLLKYYKRPKKLNNLEINGTRPSFEIPTTSINKNSSITPQIEGNETEPAKFPGIPYVATSRVGNNDRDEEVANAVKVIEEQLQVHRSWKSDKNYATCDGQGIYVYDLPSKFNKDLVGQCHDMVPWQDFCKYISNEGFGEPITKLGRGWYQTHQYSLELIFHSRVLKHPCRVYSENDAKLFYVPFYGGLDILRWHFKNVSNDVKDSLGLELVKWLERQRPWNRNSGKDHVFVLGKISWDFRRTSESPWGTRLLELDKMQNPMKLLIERQPWHVNDIGIPHPTYFHPHSDNDIIAWQLKIMRSNRKNLVSFAGAARAEAEDNIRSILIEQCSSGKCKFLNCSSVKCGESESIIELFVESEFCLQPPGDSPTRKSVFDSLISGCIPVLFDPFTAYYQYPWHLPEDHDKYSVFMDKKEVRQMNVNVVERLANISSRERENMRRYIIYELLPGLVYGDHNAELEKFQDAFAITMNNLLERVSRLDEPHKA. 1322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00344 1321 PRINTS P-type cation-transporting ATPase superfamily signature 730 749 - -
Seca10g00344 1321 PRINTS P-type cation-transporting ATPase superfamily signature 753 765 - -
Seca10g00344 1321 PRINTS P-type cation-transporting ATPase superfamily signature 530 544 - -
Seca10g00344 1321 PRINTS P-type cation-transporting ATPase superfamily signature 655 666 - -
Seca10g00344 1321 PRINTS P-type cation-transporting ATPase superfamily signature 677 687 - -
Seca10g00344 1321 PRINTS P-type cation-transporting ATPase superfamily signature 366 380 - -
Seca10g00344 1321 PRINTS Copper-transporting ATPase signature 803 817 - -
Seca10g00344 1321 PRINTS Copper-transporting ATPase signature 287 306 - -
Seca10g00344 1321 PRINTS Copper-transporting ATPase signature 439 453 - -
Seca10g00344 1321 PRINTS Copper-transporting ATPase signature 235 254 - -
Seca10g00344 1321 PRINTS Copper-transporting ATPase signature 307 325 - -
Seca10g00344 1321 PRINTS Copper-transporting ATPase signature 707 724 - -
Seca10g00344 1321 CDD P-type_ATPase_Cu-like 178 826 - -
Seca10g00344 1321 FunFam ATPase copper transporting beta 7 81 - -
Seca10g00344 1321 SUPERFAMILY HMA, heavy metal-associated domain 83 151 IPR036163 GO:0046872
Seca10g00344 1321 ProSitePatterns E1-E2 ATPases phosphorylation site. 532 538 IPR018303 -
Seca10g00344 1321 Gene3D - 611 661 IPR023299 GO:0000166
Seca10g00344 1321 Gene3D - 537 610 IPR023299 GO:0000166
Seca10g00344 1321 SFLD p-type atpase 512 781 IPR044492 -
Seca10g00344 1321 Gene3D - 82 156 - -
Seca10g00344 1321 CDD HMA 89 148 IPR006121 GO:0046872
Seca10g00344 1321 NCBIfam HAD-IC family P-type ATPase 290 809 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca10g00344 1321 Pfam haloacid dehalogenase-like hydrolase 526 744 - -
Seca10g00344 1321 SUPERFAMILY Calcium ATPase, transduction domain A 330 416 IPR008250 -
Seca10g00344 1321 CDD HMA 17 76 IPR006121 GO:0046872
Seca10g00344 1321 ProSiteProfiles Heavy-metal-associated domain profile. 11 77 IPR006121 GO:0046872
Seca10g00344 1321 ProSiteProfiles Heavy-metal-associated domain profile. 86 152 IPR006121 GO:0046872
Seca10g00344 1321 SUPERFAMILY HMA, heavy metal-associated domain 10 82 IPR036163 GO:0046872
Seca10g00344 1321 Gene3D - 497 787 IPR023214 -
Seca10g00344 1321 Pfam Heavy-metal-associated domain 91 148 IPR006121 GO:0046872
Seca10g00344 1321 Pfam Heavy-metal-associated domain 15 75 IPR006121 GO:0046872
Seca10g00344 1321 Gene3D - 305 420 - -
Seca10g00344 1321 SFLD Haloacid Dehalogenase 512 781 - -
Seca10g00344 1321 Gene3D - 10 81 - -
Seca10g00344 1321 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 2 855 - -
Seca10g00344 1321 Pfam E1-E2 ATPase 318 508 - -
Seca10g00344 1321 SUPERFAMILY HAD-like 529 836 IPR036412 -
Seca10g00344 1321 FunFam Probable copper-transporting ATPase HMA5 651 787 - -
Seca10g00344 1321 Pfam Exostosin family 933 1261 IPR040911 -
Seca10g00344 1321 FunFam Copper-transporting ATPase 1, putative 305 420 - -
Seca10g00344 1321 NCBIfam heavy metal translocating P-type ATPase 250 839 IPR027256 GO:0006812|GO:0016020|GO:0019829
Seca10g00344 1321 SUPERFAMILY Calcium ATPase, transmembrane domain M 286 523 IPR023298 -
Seca10g00344 1321 PRINTS Copper-transporting ATPase 1 signature 67 87 - -
Seca10g00344 1321 PRINTS Copper-transporting ATPase 1 signature 213 233 - -
Seca10g00344 1321 PRINTS Copper-transporting ATPase 1 signature 233 258 - -
Seca10g00344 1321 PRINTS Copper-transporting ATPase 1 signature 178 199 - -
Seca10g00344 1321 PRINTS Copper-transporting ATPase 1 signature 38 61 - -
Seca10g00344 1321 PRINTS Copper-transporting ATPase 1 signature 12 37 - -
Seca10g00344 1321 ProSitePatterns Heavy-metal-associated domain. 17 46 IPR017969 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00344 Seca-Chr10 3014493 3029269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00344 1 853 Primary Pumps ATPases AT1G63440 74.338 0.0 1310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00344 K17686 - gmx:100817431 1424.07