Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00342 ATGTCGGGAACTGGGACAGTTTCTTCAGTCACTCTGTGCCAGCCAGCTTCGACTAATGTCAGCGTTACTTATGAGGGCCGATTTCAAATAGTGTACCTATCTGGTTCTTACTTGGTTGCTGAAGATGGCGGACCTCGCAATAGAACAGGTCGTGTGAGTGTTTCTCTTTCTAGTCCCGATGGCCATGTTATTGGTGGTGGTGTTGCTAGGCTTATTGCTGCAAGCTCTGTTCAGGTGGTAGTTTGCAGTTTTGTATATGGTGGATCTAAGCCAAAGACAACAAAGCAAGGGACCACTACAAAAAATGACGATTCAGAGCCTCAGAGTAGTGATAAGTTAGCATCTCCAGGCCCAGGCAATGCCCTGCCTAATCAAAACTACACCGCTTCTGCAACAGCCATTTGGCCTGGATCAAGGCCAGTAGATCTTCAAAGTGCACATCCTCACACTGGTATTGACTTGACGCGTGGGTGA 474 0.4768 MSGTGTVSSVTLCQPASTNVSVTYEGRFQIVYLSGSYLVAEDGGPRNRTGRVSVSLSSPDGHVIGGGVARLIAASSVQVVVCSFVYGGSKPKTTKQGTTTKNDDSEPQSSDKLASPGPGNALPNQNYTASATAIWPGSRPVDLQSAHPHTGIDLTRG. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00342 157 MobiDBLite consensus disorder prediction 138 157 - -
Seca10g00342 157 MobiDBLite consensus disorder prediction 87 129 - -
Seca10g00342 157 Pfam Plants and Prokaryotes Conserved (PCC) domain 1 85 IPR005175 -
Seca10g00342 157 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 86 - -
Seca10g00342 157 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 118 IPR039605 GO:0003680
Seca10g00342 157 MobiDBLite consensus disorder prediction 89 129 - -
Seca10g00342 157 CDD DUF296 1 84 IPR005175 -
Seca10g00342 157 ProSiteProfiles PPC domain profile profile. 1 106 IPR005175 -
Seca10g00342 157 Gene3D - 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00342 Seca-Chr10 3007269 3009417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00342 1 157 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 52.023 3.33e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00342 - - tpra:123911083 230.72