LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g00342	ATGTCGGGAACTGGGACAGTTTCTTCAGTCACTCTGTGCCAGCCAGCTTCGACTAATGTCAGCGTTACTTATGAGGGCCGATTTCAAATAGTGTACCTATCTGGTTCTTACTTGGTTGCTGAAGATGGCGGACCTCGCAATAGAACAGGTCGTGTGAGTGTTTCTCTTTCTAGTCCCGATGGCCATGTTATTGGTGGTGGTGTTGCTAGGCTTATTGCTGCAAGCTCTGTTCAGGTGGTAGTTTGCAGTTTTGTATATGGTGGATCTAAGCCAAAGACAACAAAGCAAGGGACCACTACAAAAAATGACGATTCAGAGCCTCAGAGTAGTGATAAGTTAGCATCTCCAGGCCCAGGCAATGCCCTGCCTAATCAAAACTACACCGCTTCTGCAACAGCCATTTGGCCTGGATCAAGGCCAGTAGATCTTCAAAGTGCACATCCTCACACTGGTATTGACTTGACGCGTGGGTGA	474	0.4768	MSGTGTVSSVTLCQPASTNVSVTYEGRFQIVYLSGSYLVAEDGGPRNRTGRVSVSLSSPDGHVIGGGVARLIAASSVQVVVCSFVYGGSKPKTTKQGTTTKNDDSEPQSSDKLASPGPGNALPNQNYTASATAIWPGSRPVDLQSAHPHTGIDLTRG.	158

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g00342	157	MobiDBLite	consensus disorder prediction	138	157	-	-
	Seca10g00342	157	MobiDBLite	consensus disorder prediction	87	129	-	-
	Seca10g00342	157	Pfam	Plants and Prokaryotes Conserved (PCC) domain	1	85	IPR005175	-
	Seca10g00342	157	SUPERFAMILY	AF0104/ALDC/Ptd012-like	2	86	-	-
	Seca10g00342	157	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	1	118	IPR039605	GO:0003680
	Seca10g00342	157	MobiDBLite	consensus disorder prediction	89	129	-	-
	Seca10g00342	157	CDD	DUF296	1	84	IPR005175	-
	Seca10g00342	157	ProSiteProfiles	PPC domain profile profile.	1	106	IPR005175	-
	Seca10g00342	157	Gene3D	-	1	101	-	-

Showing 1 to 9 of 9 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g00342	Seca-Chr10	3007269	3009417	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g00342	1	157	AT-hook Motif Nuclear Localized (AHL) Family	AT1G63470	52.023	3.33e-42	142

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g00342	-		-	tpra:123911083	230.72

Showing 1 to 1 of 1 entries