Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00338 ATGAGAAGCAGTCTTCCTGACCTTTTTGATGCACAACCTGATCTGCTTTTTCAGCTTGTCACTATGTTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTACAGCATACTTCAGGAGCCTGGAAATTTTGTTATTACCTTCCCCAGATCTTATCATGGTGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCGTATGGTGCATTTGGAGCTGATCTCTATCAGCGGTATCACAAAACTGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTGGCCCAGTATGGTGATGTTGATAGTAGAGCGTCTTCTTATTTGAAAAAGGAATTATTGAGAATATCAGATAAAGAAAAATCTTGGAGAGAGAAACTTTGGAAAAATGGTATCATTAAATCTTCTCGCTTAGCTCCTCGAAAATGTCCCCAATATGTGGGTACTGAAGAGGATCCAGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCTGTTGTGTGCAGTTGCAGGCCATCATCTTTTGTGTGTTTGGAGCACTGGGAACGCCTTTGTGAGTGCAAAACTGTAAAACTCCGTCTTCTCTATCGTCATTCACTTGCAGAATTGTATGACTTGTCATTTTCTATGGACAAATATACTGCTGAGGACAAAGCTGAGTGTAGAAGTGTAAGAAGGCAGTCTTCATGTCTTGGTGCTTTGACAAAAAAGGTGAAAGGTGGCCCCATTACTTTTGCTCAACTTGCTACAGAATGGCTTCTGCAGTCTAGTACTATACTTCAAAACGTTTTTTTGACTGATGCATTTGTTACTGCACTAAAGAAAGCTGAACAATTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTAGGGATATGGTGAAGAATTTGATTGAAGCTAAGAAATGGGCAGAAGGGATAAGAGATTGTGTGACAAAAATTGAGTTATGGAAGTGTCATCAGGACTCGAGTTTAAAGAAAATTCATTTAGAATTTGTTGACGAGTTACTGAGATTTAACCCTGTACCATGCAATGAGCCTCATTATCATAAATTGAAGGAATATGCAGAAGAAGCAAGGTTGTTAAGTCAGGAGATTGGTGCTGCTTTGTCAATCTGTTCTGAAATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTACCCATCTACTTGAAAGAGAGTAAGAAATTAGAAGGGAAAATTTCTTCAACCAAGGCATGGCTGGATAGTGTTAGAAAATGCATCTCAGCGAGAGATCCTGCTGCATTAGAGGTTGATGTCCTTTACAAGTTAAAATCAGAGATTGCAAATCTTCAAGTTCAACTCCCAGAGATAGATGGGCTTCAGAATCTATTAAGTCAAACTGAATCTTGTAGTGCTCGATGTCGTGATATGTTACAAGGTCCAATGGATCTCAAGAATGTTGGTTTGTTGCTTAAGGAATGGGACAACTTTACAGTTGATGTACCCGAGTTGAAGCTTCTACGGCATTACCATTCGGATGCTGTTTCATGGGTTTCCCACTTTCATGATGCTTTAGGGAGGGTTCACAAGCAGGAAGATCAACATAATGTAGTTGATGAATTGAAGAAAATTTTTGAAGAAGGTTTATCTTTGACAATTAAAGTTGATGAGTTGCCATTAGTTGAGATTGAGCTGAAGAAAGCTAATTGCCGACAAAAAGCTTTAAAGGCACATGATTCAAAGATGCCTCTAGAATTCATTCAGCAACTATTGAAGGAGGCCGCAATGCTAGAAATTGAGGGAGAGAAACAGTTCGTCTATTTATCTTCTGTGCTTGGTATTGCCATGCCTTGGGAGGAAAGGGCTAGGGAGATTCTTTCACATGGGGCTTCTATTTCTGACTTTGAGGACATGATCAGAGCTTCAGAAAACATATTTGTTATTCTTCCTTCACTTAATGATGTCAAAGAAGCATTATCAGAAGCTAATTCCTGGTTAAGGAGTTCAAAGCCATATTTAGTCTCTTCTACTTGTGCATCAAATTCTGTGTGGAAAGTCGAGGACTTGCAGATTTTGGTTTCTCAATCAAAGCATCTTAAAATATCTTTAGAAGAAAGAGGGATGCTTGAATTAGTTTTGAATAACTGCAAAAAATGGGAGTATGAAGCATGTTCCCTAATAGATGATGCTCGATGCCTCTTTGAGTTGGATACCACTGTCCATGGAATAAGCAGCAGTTTAATGTCTAAAGTGGAAGATCTGGTTGCAAGAATCCAATCTACTATAACATCTGGTGTATCACTTGGTTTTGACTTCAGCGATATTCCAAAACTTCAAGCATCTTGTTCTACACTGCAATGGTGCAGAAGAGCCATATTTTTCTGCAATCATTCTCCTTCTTTAGAGGATGTTTTGGAGGTTGCGGACGGTCTCTCTCATTCCTTTGTTTCTGGTGCTCTGTTGAAAGTACTGGTTGATGGGGTTGAATGGCTTAAGAGAGCGTTAGAGGGGATTTCTGCACCTCGCCATTCTAGAAAATGCAAATTCACTGACGTTCAAGATATTCTTAGTGATTATCAGACTATTAAAATGACCTTTGCAGCAGTGAAGTGTCATCTTGTAGAAGCCATTGGAAAACATAAGTTGTGGCAAGAGCAAGTGCATCAATTTTTTGGTCTAAGTTCTAGGGAACGTGCTTGGTCATCAATAGTGCAGCTCAAGGAACTCGGAGATACTGTTGCCTTTGGTTGCTCAGAACTAGATCTGATTTCATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAAAGATGCTTGGATAACATGGGAACTTTAGTCCAAAATGAGAATTCACTGCTTCATGCTCTGGAGGAGATAAAACAGACTCTAGATAGATCTTTGCTCATATATGGCATGTTGCAAGATCAGAAGGAACAAAACCGATGCATCTGCTGCTTTATTGATTCTGAAGATCAGGAATTTCTTACTTGTACCACTTGTATGGACTGCTATCACTTGCGGTGCATTGGACTAACAGCAAAGGACACAGGCCTCGGAGACTATAAGTGCCGATATTGTGAAATTGTGAAGGGTGAATCCCAATTTTCAGATGGAAGTGCCCTTCTGAGGTTTGAGAAGAAGCGTCTTGAATTGAACGTTCTTATTGAACTTCTATCCGATGCTGAACATTTCTGTTTATGGATTGATGAGAGAGATATTTTGAACCAACTTGTTGAGAAAGCCCTGGCTTGCAAATCTTGCTTGAGAGAAACAGTGAACCTTGCATCAGCTAATATTGATGAAGATATTAGCATCATCTCTGAAAAACTGACTGTTGCTATAAAGGCTATCAAAGTGGCTGGTGTCTATGATCAACATGATAATTGTGACCTTGAGCTGGCTTTAGCAAAAAACTTGTGGAAAATTCAAGTCGATAGATTGTTAAATGGTGTACGGAAGCCCGCTATCCAACAGATTCAGAAGCATCTGAAAGAGTTTGTACCTGCTGAATTGTCGAAATACATGATAGGGAGTGGCTATGGAAATATCACCTGA 3546 0.3979 MRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKTAVLSHEELLCVVAQYGDVDSRASSYLKKELLRISDKEKSWREKLWKNGIIKSSRLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWERLCECKTVKLRLLYRHSLAELYDLSFSMDKYTAEDKAECRSVRRQSSCLGALTKKVKGGPITFAQLATEWLLQSSTILQNVFLTDAFVTALKKAEQFLWAGSEMDSVRDMVKNLIEAKKWAEGIRDCVTKIELWKCHQDSSLKKIHLEFVDELLRFNPVPCNEPHYHKLKEYAEEARLLSQEIGAALSICSEMSELELLYSRACGLPIYLKESKKLEGKISSTKAWLDSVRKCISARDPAALEVDVLYKLKSEIANLQVQLPEIDGLQNLLSQTESCSARCRDMLQGPMDLKNVGLLLKEWDNFTVDVPELKLLRHYHSDAVSWVSHFHDALGRVHKQEDQHNVVDELKKIFEEGLSLTIKVDELPLVEIELKKANCRQKALKAHDSKMPLEFIQQLLKEAAMLEIEGEKQFVYLSSVLGIAMPWEERAREILSHGASISDFEDMIRASENIFVILPSLNDVKEALSEANSWLRSSKPYLVSSTCASNSVWKVEDLQILVSQSKHLKISLEERGMLELVLNNCKKWEYEACSLIDDARCLFELDTTVHGISSSLMSKVEDLVARIQSTITSGVSLGFDFSDIPKLQASCSTLQWCRRAIFFCNHSPSLEDVLEVADGLSHSFVSGALLKVLVDGVEWLKRALEGISAPRHSRKCKFTDVQDILSDYQTIKMTFAAVKCHLVEAIGKHKLWQEQVHQFFGLSSRERAWSSIVQLKELGDTVAFGCSELDLISSEVEKVENWKKRCLDNMGTLVQNENSLLHALEEIKQTLDRSLLIYGMLQDQKEQNRCICCFIDSEDQEFLTCTTCMDCYHLRCIGLTAKDTGLGDYKCRYCEIVKGESQFSDGSALLRFEKKRLELNVLIELLSDAEHFCLWIDERDILNQLVEKALACKSCLRETVNLASANIDEDISIISEKLTVAIKAIKVAGVYDQHDNCDLELALAKNLWKIQVDRLLNGVRKPAIQQIQKHLKEFVPAELSKYMIGSGYGNIT. 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00338 1181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 964 1029 IPR013083 -
Seca10g00338 1181 SUPERFAMILY FYVE/PHD zinc finger 973 1024 IPR011011 -
Seca10g00338 1181 SUPERFAMILY Clavaminate synthase-like 2 101 - -
Seca10g00338 1181 Gene3D Cupin 1 112 - -
Seca10g00338 1181 ProSiteProfiles JmjC domain profile. 1 86 IPR003347 -
Seca10g00338 1181 Pfam PLU-1-like protein 481 717 IPR013637 -
Seca10g00338 1181 Pfam PLU-1-like protein 428 517 IPR013637 -
Seca10g00338 1181 Pfam PLU-1-like protein 683 935 IPR013637 -
Seca10g00338 1181 Pfam C5HC2 zinc finger 163 214 IPR004198 -
Seca10g00338 1181 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 572 - -
Seca10g00338 1181 Pfam JmjC domain, hydroxylase 9 69 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00338 Seca-Chr10 2962879 2982267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00338 1 212 JUMONJI Transcription Factor Family AT1G08620 40.517 1.63e-39 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca10g00338 PLU-1 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00338 K11446 - gmx:100789512 1958.73