Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca10g00331 | ATGGGCGGTTGCTGTTGTTGTTCCTCCAAAGAGACTGAATTGACCGCTCCGCCTGCATACTACTATTACCCAAGAGTATCAGAGGAGCATGTCCCACTATCATCTCACCATGGTGCTGCTCCTGCTTTTTCTGGGGGGCTCTTAGTTGATACCAATCTAGACACTTCAAGTCCTGACACCTATAGACCGCCTCCTGCTCCTATCCCGTTCAATGTTACATCAGGTGTCACTCAAACTCCACCTGTGGTGCAAGAAATTTGTGTTGACAAAACTAATGCATCCCCACATACTACAAATTCTACTTCAATTCAAGAAACAGTTGCCGCTGACAATCATGGGGCCTCAGTTAAGTCGGAAGACTTGAAGGAATCAGAAAGTAAAGTTCAAACTGCTTTAGAACTTGACCCAGAAAAGGATCCTGAAATTGAACTTCCCAAGTTGGCTGAACCTATCATTTTAGTGGAAGAGGAGGATGCGTGCCCAATTTGTTTAGAAGAGTATGATGCAGAGAATCCAAAACTCTCCACAAAATGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGTCCTGTGTGTGATAAGGATATGGTTTTCAATCCTCCCATTGATTAA | 636 | 0.4355 | MGGCCCCSSKETELTAPPAYYYYPRVSEEHVPLSSHHGAAPAFSGGLLVDTNLDTSSPDTYRPPPAPIPFNVTSGVTQTPPVVQEICVDKTNASPHTTNSTSIQETVAADNHGASVKSEDLKESESKVQTALELDPEKDPEIELPKLAEPIILVEEEDACPICLEEYDAENPKLSTKCDHHFHLACILEWMERSETCPVCDKDMVFNPPID. | 212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca10g00331 | 211 | ProSiteProfiles | Zinc finger RING-type profile. | 160 | 201 | IPR001841 | - | |
| Seca10g00331 | 211 | SMART | ring_2 | 160 | 200 | IPR001841 | - | |
| Seca10g00331 | 211 | CDD | RING-H2_AIRP1-like | 156 | 204 | - | - | |
| Seca10g00331 | 211 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 206 | IPR013083 | - | |
| Seca10g00331 | 211 | SUPERFAMILY | RING/U-box | 152 | 207 | - | - | |
| Seca10g00331 | 211 | Pfam | Ring finger domain | 159 | 200 | IPR001841 | - | |
| Seca10g00331 | 211 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 39 | 207 | - | - | |
| Seca10g00331 | 211 | FunFam | Putative E3 ubiquitin-protein ligase RHB1A | 137 | 205 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca10g00331 | Seca-Chr10 | 2906429 | 2909114 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca10g00331 | 1 | 211 | C3H Transcription Factor Family | AT5G41350 | 56.481 | 2.75e-73 | 219 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca10g00331 | - | - | gmx:100816369 | 351.288 |