Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00327 ATGGGATTTCCAGTGGGGTATACAGAGCTTATGTTGCCAAAGGTGTTTGTGCAGCTGCTTTCCGTATTGGGTTTCATCAGGAAATTGGTGACCATCCTGTTGTGCTATCTGGGTCTGGAACCCGACGACATTGCCTGGCCGGAGAGGATGCCGGAATTCGAATCGGTGTCAGCTCTTCTGATGGGGGAAATCCTGCCGGTGGTGAAGTTCTCGGAGGTGGAGATGGTGGACCCTCAGGAGAGGTGCGCCGTGTGCCTGTACGACTTCGAGGCAGAGGACGAGATCAGAAGGCTCACAAACTGCCGCCACATATTCCACAGGGGATGTCTGGACCGTTGGATGGGATATGATCGGAGAACGTGCCCGTTGTGCCGGACACCCTTCATACCCCATCATATGCAAGATACTTTCAATGAAATTGACACACTCTGGGAAGCTTCTGGAATCCCTGATTTTTATGATGATCATCCTTCTACCATCACGCCTTTCTAG 492 0.5183 MGFPVGYTELMLPKVFVQLLSVLGFIRKLVTILLCYLGLEPDDIAWPERMPEFESVSALLMGEILPVVKFSEVEMVDPQERCAVCLYDFEAEDEIRRLTNCRHIFHRGCLDRWMGYDRRTCPLCRTPFIPHHMQDTFNEIDTLWEASGIPDFYDDHPSTITPF. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00327 163 SMART ring_2 82 124 IPR001841 -
Seca10g00327 163 SUPERFAMILY RING/U-box 81 131 - -
Seca10g00327 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 130 IPR013083 -
Seca10g00327 163 Pfam Ring finger domain 81 125 IPR001841 -
Seca10g00327 163 ProSiteProfiles Zinc finger RING-type profile. 82 125 IPR001841 -
Seca10g00327 163 PANTHER RING ZINC FINGER PROTEIN-RELATED 23 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00327 Seca-Chr10 2884140 2884631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00327 1 148 C3H Transcription Factor Family AT1G63840 57.325 1.04e-56 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00327 K16281 - gmx:102665617 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00327 10 2884140 2884631 Seca10g00327 10 2884140 2884631 ECH
Seca10g00327 10 2884140 2884631 Seca10g00327 10 2884140 2884631 PCT