Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00325 ATGCAGACTCATCTATCGAACCAGATCCAAGGCTTTGTGTCGACGGAGGCAGAGATGTTCAACCTCAGCGGCACAGGCATGGAAATGATAGGGTTTCCCAAGCAACAACAGAGTGAATGGAAAAGCTTCTTCTCCAAACCTGGTCCGACTTCTTCCAGCACCATGAACGAGTCTTGTAGTAATTTCTTCCAGCATCAGCATGAATACACAAACACAACTGCAGGGATTTCTGAAACAGGTAGCCAGAATCTGATTGTTGGTGATTCCTCAGCAGCATGGCAGGGAGAGAACAGATCATTGGTGGTGGAAGATTCTTCTTTAAGGTGTGTGTTCCCTTGTGAAGGAAATGAAAGGCCAAGTCAAGGCCTTTCACTCTCTCTCAGTTCAAACAATCCTTCCAGTATTGGGTTGCAATCTTTTGAGCTAAGACATCATCAACCCCAATCTGATTTCGTCTCAGATGGGAAATCATCATCAGGGAATGCTCAACAACAACAGATGACGTTGGAAGATGTGTATTTGAGTGCCAAAGCTGCTGCAAATCTTTATCATTCAGGACATTTCTTGCTCACGAACTCCAAGTACTTGGTACCTGCACAGGAACTTTTGAACGAGTTTTGTAGTCTAGACGCAAGGCAAAGTGATGATGTGGCAAAGCAAAAGTTGGAGAAGAACAAGGCGCAGTTGGAAATAGATCAGGATACCTCAAAGAAGCATTCTCTCACCTCTCTAGAGTTGGCTGAATTGCACAAGAGAAAGATAAAGCTGCTTTCCATGCTGGAAGAGGTTGAGAGAAGATATAGGCACTACCGTAATCAGATGAAGGCGGTGGTGTCTTCATTTGAAGCAGTGGCTGGGAATGGGGCTGCGACGGTGTACTCAGCGTTGGCCTTGAAAGCCATGTCGAGACATTTCAGGTGTTTGAAGGATGGGATTATGGGACAGATTGAGGTGACAAGGAAAGGCATGGGAGAGAGAGATGCTGCAGTTGGAACAAGCAGCAGGGGGGAAACGCCGAGGCTGAAAATAATAGACCAAGCACTGAGACAACAAAGGGCGTTTCAGCAAATGAACATGACGGAAACCCATCCATGGAGACCCCAGCGTGGCCTTCCCGACCGTTCTGTCTCCATTCTAAGGGCTTGGCTTTTTGACCATTTTCTCAATCCGATTAACCTTTGCAGGTACCCAAGTGATGTTGATAAACATATTTTAGCCCGCCAGACTGGTCTCTCCAGAAGTCAGGTTTCGAATTGGTTTATTAACGCGAGGGTGAGGCTATGGAAGCCAATGGTGGAGGATATGTACTTGGAGGAAGTGAAGGAACAAGAAAACAATATTAATTGTGAGGATGATCAGAAGCCAACAGTTGGATTAAATAATATTGATTCCGAGTGTGCATCCATCAACAACCAACAACATATCAATGCTTTTTCATCATCTAACACAAGTAGTGGGGGTGGAGTGTCTTTGACGCTGGGGTTAAAACAAGCGCCACCAAGTCAGAGTTCAGTGTTGTATCCAATTGTAAGGGAACCAGGTGTTGTTCAGTACTCTCTTTTCGATGAGGAAGGACTTAACCCGCTGCAGCCATACAGGAATTTGATGGACGCACAGCTGCTCCATCACCTCCCGGGTTAG 1641 0.4589 MQTHLSNQIQGFVSTEAEMFNLSGTGMEMIGFPKQQQSEWKSFFSKPGPTSSSTMNESCSNFFQHQHEYTNTTAGISETGSQNLIVGDSSAAWQGENRSLVVEDSSLRCVFPCEGNERPSQGLSLSLSSNNPSSIGLQSFELRHHQPQSDFVSDGKSSSGNAQQQQMTLEDVYLSAKAAANLYHSGHFLLTNSKYLVPAQELLNEFCSLDARQSDDVAKQKLEKNKAQLEIDQDTSKKHSLTSLELAELHKRKIKLLSMLEEVERRYRHYRNQMKAVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGIMGQIEVTRKGMGERDAAVGTSSRGETPRLKIIDQALRQQRAFQQMNMTETHPWRPQRGLPDRSVSILRAWLFDHFLNPINLCRYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEDMYLEEVKEQENNINCEDDQKPTVGLNNIDSECASINNQQHINAFSSSNTSSGGGVSLTLGLKQAPPSQSSVLYPIVREPGVVQYSLFDEEGLNPLQPYRNLMDAQLLHHLPG. 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00325 546 Pfam Homeobox KN domain 382 426 IPR008422 GO:0003677|GO:0006355
Seca10g00325 546 Gene3D - 368 435 - -
Seca10g00325 546 Pfam Associated with HOX 190 312 IPR006563 -
Seca10g00325 546 SUPERFAMILY Homeodomain-like 366 436 IPR009057 -
Seca10g00325 546 ProSiteProfiles 'Homeobox' domain profile. 383 430 IPR001356 GO:0003677
Seca10g00325 546 SMART HOX_1 365 434 IPR001356 GO:0003677
Seca10g00325 546 CDD homeodomain 365 431 IPR001356 GO:0003677
Seca10g00325 546 SMART prehox3 184 314 IPR006563 -
Seca10g00325 546 Coils Coil 246 280 - -
Seca10g00325 546 Coils Coil 219 239 - -
Seca10g00325 546 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 128 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00325 Seca-Chr10 2841170 2844576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00325 95 544 Homeobox Transcription Factor Family AT5G41410 45.234 2.39e-114 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca10g00325 POX 9.5e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00325 - - gmx:100787954 620.157