Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00318 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAGCTCATCCGATACATTACCACTCATGGCTATGGCTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAACGGTGTGGTAAGAGCTGCCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTCGAAGAGGCAGGTTTACACCTGACGAGGAGAAGTTAATTATTAGCCTTCATGGGGTTGTTGGCAACAGCAGATGGGCTCACATTGCAAGCCACTTGCCTGGAAGAACTGACAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATACGAAAATCTTCTTCAGTGCCTTCATCCATCACTACCACCACAACACATCAAAGCATTGATCATCCCCAGTTCAATTATAATTCCAATCAACTAGATCACTTCGCCAACCAAGAAAACACCATAACAGCAAAGCCAACGATACAAGAACCCTTATTTTCTTCCACATGCCCTTTATTTATGTTTGACACTAGTTCATTAGATGGAACAATAACATCAGCAGATCACACCAATAGCAATAACGCACGAGCATCAGATCAATTATTCCAAGATACAAGTACTGTGGGTTTGAGTTGTGCAGAAACGTGGAACTTGAGCATCCACCAACAAGTCCAGGCCCTTCCTCCTCATCCAGTAACAACTTTTTCAGCAGCTGCAGTCATTGATTCTACTAATTATCTGCCACCATTGATAGAGAACATGGTGCCAATTGATGTACAATCTTGCAACATGGAGGAAGAAGGAGAACTAACACTAGAGTGCTTGCAGAGACAAGGGTTGAATGAGTGGGTGGAGAGCCAACAACAATGTCCTAGCTTTCTTTTTTGGGACAGTGTAGTGGAAGGACAACTTGGAGGAGGGGGAGAATTAGCACCAAACTCATCAAATATGGGAACAAATACACTTTCTCCTTTTCCTTCATCTTTATGA 999 0.4284 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPDEEKLIISLHGVVGNSRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKSSSVPSSITTTTTHQSIDHPQFNYNSNQLDHFANQENTITAKPTIQEPLFSSTCPLFMFDTSSLDGTITSADHTNSNNARASDQLFQDTSTVGLSCAETWNLSIHQQVQALPPHPVTTFSAAAVIDSTNYLPPLIENMVPIDVQSCNMEEEGELTLECLQRQGLNEWVESQQQCPSFLFWDSVVEGQLGGGGELAPNSSNMGTNTLSPFPSSL. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00318 332 Gene3D - 6 66 - -
Seca10g00318 332 FunFam MYB transcription factor 6 66 - -
Seca10g00318 332 PANTHER MYB DOMAIN PROTEIN 55 1 236 - -
Seca10g00318 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca10g00318 332 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca10g00318 332 CDD SANT 17 61 IPR001005 -
Seca10g00318 332 CDD SANT 69 113 IPR001005 -
Seca10g00318 332 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Seca10g00318 332 Gene3D - 69 140 - -
Seca10g00318 332 SMART sant 66 115 IPR001005 -
Seca10g00318 332 SMART sant 13 63 IPR001005 -
Seca10g00318 332 FunFam Transcription factor MYB26 68 141 - -
Seca10g00318 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca10g00318 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 117 IPR017930 -
Seca10g00318 332 MobiDBLite consensus disorder prediction 312 332 - -
Seca10g00318 332 ProSiteProfiles Myb-like domain profile. 62 113 IPR001005 -
Seca10g00318 332 MobiDBLite consensus disorder prediction 309 332 - -
Seca10g00318 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00318 Seca-Chr10 2777354 2779763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00318 1 305 MYB Transcription Factor Family AT1G63910 51.966 4.98e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g00318 Myb_DNA-binding 5.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00318 K09422 K02947 gmx:100803556 489.574